BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
☆29Apr 3, 2024Updated 2 years ago
Alternatives and similar repositories for BLADE
Users that are interested in BLADE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- CDSeq R Package☆21Jul 1, 2025Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆87Jul 12, 2023Updated 3 years ago
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆19Aug 3, 2026Updated 2 months ago
- Unified access to several second-generation deconvolution methods☆113Aug 3, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Feb 8, 2024Updated 2 years ago
- SCDC☆52Jun 20, 2025Updated last year
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆21Sep 17, 2026Updated 3 weeks ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆34May 1, 2025Updated last year
- Deep Learning based cell composition analysis with Scaden.☆92Nov 5, 2024Updated last year
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆18Jun 2, 2022Updated 4 years ago
- ☆10Apr 24, 2024Updated 2 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 8 months ago
- ☆14Jul 1, 2025Updated last year
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated 3 months ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆253Apr 3, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multi-subject Single Cell Deconvolution☆315Mar 4, 2024Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆250May 11, 2026Updated 5 months ago
- ☆43Aug 29, 2025Updated last year
- ☆21May 31, 2024Updated 2 years ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- ☆39Apr 21, 2026Updated 5 months ago
- ☆11Aug 21, 2024Updated 2 years ago
- ☆29Sep 25, 2015Updated 11 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11May 5, 2023Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆123Mar 9, 2026Updated 7 months ago
- ☆14Oct 4, 2022Updated 4 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38☆17May 20, 2024Updated 2 years ago
- ☆11May 6, 2021Updated 5 years ago