tgac-vumc / BLADELinks
BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
☆28Updated last year
Alternatives and similar repositories for BLADE
Users that are interested in BLADE are comparing it to the libraries listed below
Sorting:
- ☆35Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆82Updated 3 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- scWGCNA☆61Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆41Updated last week
- ☆32Updated 5 months ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- ☆41Updated 4 years ago
- ☆47Updated 5 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆75Updated 3 months ago
- pseudobulking on an AnnData object☆32Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Gene expression deconvolution using dampened weighted least squares☆28Updated 4 years ago
- ☆34Updated last year
- ☆30Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- ☆32Updated 6 years ago
- CDSeq R Package☆20Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 5 months ago
- ☆52Updated 9 months ago