BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
☆29Apr 3, 2024Updated 2 years ago
Alternatives and similar repositories for BLADE
Users that are interested in BLADE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- CDSeq R Package☆21Jul 1, 2025Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆87Jul 12, 2023Updated 3 years ago
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆19Jul 6, 2026Updated 2 weeks ago
- Unified access to several second-generation deconvolution methods☆109Jul 6, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Feb 8, 2024Updated 2 years ago
- SCDC☆48Jun 20, 2025Updated last year
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Mar 5, 2026Updated 4 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆32May 1, 2025Updated last year
- Deep Learning based cell composition analysis with Scaden.☆91Nov 5, 2024Updated last year
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆18Jun 2, 2022Updated 4 years ago
- ☆10Apr 24, 2024Updated 2 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 5 months ago
- ☆14Jul 1, 2025Updated last year
- Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing …☆14Jun 2, 2014Updated 12 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated 2 weeks ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆19May 31, 2024Updated 2 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆244Apr 3, 2026Updated 3 months ago
- Multi-subject Single Cell Deconvolution☆303Mar 4, 2024Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆246May 11, 2026Updated 2 months ago
- ☆41Aug 29, 2025Updated 10 months ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- ☆39Apr 21, 2026Updated 3 months ago
- ☆11Aug 21, 2024Updated last year
- ☆29Sep 25, 2015Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- ☆11May 5, 2023Updated 3 years ago
- ☆13Oct 4, 2022Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 4 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38☆17May 20, 2024Updated 2 years ago