Multi-subject Single Cell Deconvolution
☆312Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for MuSiC
Users that are interested in MuSiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCDC☆51Jun 20, 2025Updated last year
- Cell types enrichment analysis☆216May 27, 2024Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆36Feb 28, 2022Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆82Jun 13, 2025Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆343Nov 1, 2022Updated 3 years ago
- Scissor package☆277May 10, 2024Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆551Aug 3, 2026Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆680Jun 1, 2026Updated 3 months ago
- Methods for detecting doublets in single-cell sequencing data☆267Aug 31, 2026Updated 3 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆672Jun 5, 2026Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆48Jun 12, 2023Updated 3 years ago
- A toolkit for single-cell immune profiling☆376Aug 14, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for detecting doublets in single-cell RNA sequencing data☆566Mar 21, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆251Apr 3, 2026Updated 5 months ago
- R package to infer biological activities from omics data using a collection of methods.☆308Dec 16, 2025Updated 9 months ago
- Inferring CNV from Single-Cell RNA-Seq☆685Nov 14, 2025Updated 10 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆314Jun 17, 2025Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆231Jul 2, 2026Updated 2 months ago
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 11 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆448Aug 25, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- AUCell: score single cells with gene regulatory networks☆204Mar 9, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- Unified access to several second-generation deconvolution methods☆111Aug 3, 2026Updated last month
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆246May 8, 2023Updated 3 years ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 9 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆242Jul 6, 2026Updated 2 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆259Jun 28, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆137Feb 11, 2024Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆185Jun 10, 2024Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆498Apr 5, 2024Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆494Jun 16, 2026Updated 3 months ago
- Simplify functional enrichment results☆128Jan 30, 2026Updated 7 months ago