Multi-subject Single Cell Deconvolution
☆288Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for MuSiC
Users that are interested in MuSiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCDC☆46Jun 20, 2025Updated 9 months ago
- Cell types enrichment analysis☆208May 27, 2024Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 9 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Feb 28, 2022Updated 4 years ago
- Scissor package☆254May 10, 2024Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated last month
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆233Feb 12, 2026Updated last month
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆529Jan 5, 2026Updated 2 months ago
- NicheNet: predict active ligand-target links between interacting cells☆630Nov 12, 2025Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆317Nov 1, 2022Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆625Oct 10, 2025Updated 5 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆47Jun 12, 2023Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆772Jan 6, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆533Mar 21, 2025Updated last year
- A toolkit for single-cell immune profiling☆366Mar 9, 2026Updated 2 weeks ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆229May 29, 2025Updated 9 months ago
- Inferring CNV from Single-Cell RNA-Seq☆660Nov 14, 2025Updated 4 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆293Jun 17, 2025Updated 9 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆220Mar 9, 2026Updated 2 weeks ago
- R package to infer biological activities from omics data using a collection of methods.☆286Dec 16, 2025Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆423Sep 4, 2025Updated 6 months ago
- AUCell: score single cells with gene regulatory networks☆189Mar 9, 2024Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆262Oct 17, 2025Updated 5 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆331Jul 28, 2020Updated 5 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆221Mar 8, 2026Updated 2 weeks ago
- Assessing the purity of single cell population☆143Jun 3, 2022Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 3 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- High dimensional weighted gene co-expression network analysis☆468Mar 13, 2026Updated last week
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆479Apr 5, 2024Updated last year
- ☆361Dec 9, 2021Updated 4 years ago
- ☆130Feb 11, 2024Updated 2 years ago
- Simplify functional enrichment results☆124Jan 30, 2026Updated last month
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆234Mar 28, 2024Updated last year
- Metacell - Single-cell mRNA Analysis☆120Mar 16, 2026Updated last week
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Mar 8, 2026Updated 2 weeks ago