Multi-subject Single Cell Deconvolution
☆306Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for MuSiC
Users that are interested in MuSiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCDC☆50Jun 20, 2025Updated last year
- Cell types enrichment analysis☆213May 27, 2024Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆35Feb 28, 2022Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆83Jun 13, 2025Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆336Nov 1, 2022Updated 3 years ago
- Scissor package☆271May 10, 2024Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆548Aug 3, 2026Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆671Jun 1, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆259Jul 7, 2026Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆667Jun 5, 2026Updated 2 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆48Jun 12, 2023Updated 3 years ago
- A toolkit for single-cell immune profiling☆374Jul 9, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package for detecting doublets in single-cell RNA sequencing data☆557Mar 21, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆245Apr 3, 2026Updated 4 months ago
- R package to infer biological activities from omics data using a collection of methods.☆304Dec 16, 2025Updated 7 months ago
- Inferring CNV from Single-Cell RNA-Seq☆680Nov 14, 2025Updated 8 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆310Jun 17, 2025Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated last month
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 9 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- AUCell: score single cells with gene regulatory networks☆202Mar 9, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- Unified access to several second-generation deconvolution methods☆110Aug 3, 2026Updated last week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆244May 8, 2023Updated 3 years ago
- Assessing the purity of single cell population☆155Jun 3, 2022Updated 4 years ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆214Dec 10, 2025Updated 8 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆240Jul 6, 2026Updated last month
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆257Jun 28, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆137Feb 11, 2024Updated 2 years ago
- ☆364Dec 9, 2021Updated 4 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆344Apr 23, 2024Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆184Jun 10, 2024Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆495Apr 5, 2024Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆490Jun 16, 2026Updated last month
- Simplify functional enrichment results☆127Jan 30, 2026Updated 6 months ago