Alternatives and similar repositories for MuSiC

Users that are interested in MuSiC are comparing it to the libraries listed below

• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆300Updated 3 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆205Updated last year
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆212Updated last month
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆299Updated 3 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆224Updated last year
• navinlabcode / copykat
  ☆257Updated last month
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆239Updated 3 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆218Updated last month
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆258Updated last month
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆217Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆198Updated last month
• sunduanchen / Scissor
  Scissor package
  ☆243Updated last year
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆242Updated last week
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 2 months ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆315Updated last year
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆169Updated last year
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆233Updated last week
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆214Updated 6 months ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆226Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆183Updated 2 years ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆302Updated last month
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆242Updated 7 months ago
• huayc09 / SeuratExtend
  ☆193Updated 3 weeks ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆283Updated 5 months ago
• neurorestore / Libra
  ☆178Updated 7 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆171Updated last month
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆174Updated last year
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆139Updated 2 years ago