xuranw / MuSiC
Multi-subject Single Cell Deconvolution
☆234Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for MuSiC
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆154Updated 9 months ago
- Methods for detecting doublets in single-cell sequencing data☆164Updated 3 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆182Updated 3 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆259Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆218Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆166Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆216Updated this week
- A Bayesian model for compositional single-cell data analysis☆150Updated last year
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆212Updated 8 months ago
- Scissor package☆189Updated 6 months ago
- Interactively analyze single cell genomic data☆179Updated 3 weeks ago
- ☆210Updated 4 months ago
- ☆153Updated 2 months ago
- Clustering scRNAseq by genotypes☆168Updated this week
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆199Updated 8 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆211Updated 8 months ago
- R package to access DoRothEA's regulons☆133Updated 8 months ago
- A tool for detecting somatic variants in single cell data☆170Updated 2 months ago
- SingleCellNet: classify single cells across species and platforms☆131Updated last year
- Fast Wilcoxon and auROC☆167Updated last week
- Interpretation of cell states using reference single-cell maps☆252Updated this week
- Clone of the Bioconductor repository for the SingleR package.☆177Updated this week
- Easy single cell analysis platform for enrichment☆149Updated 2 weeks ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆184Updated 7 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆158Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆270Updated 6 months ago
- Cell types enrichment analysis☆184Updated 5 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆158Updated 3 months ago
- chromatin Variability Across Regions (of the genome!)☆159Updated 4 months ago