meichendong / SCDCLinks
SCDC
☆45Updated 4 months ago
Alternatives and similar repositories for SCDC
Users that are interested in SCDC are comparing it to the libraries listed below
Sorting:
- scWGCNA☆61Updated 2 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 6 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- ☆50Updated 5 years ago
- ☆41Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- ☆62Updated 6 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Code repository for single cell RNA-seq☆37Updated 5 years ago
- ☆58Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 11 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆41Updated 3 weeks ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year