SCDC
☆46Jun 20, 2025Updated 9 months ago
Alternatives and similar repositories for SCDC
Users that are interested in SCDC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 9 months ago
- Multi-subject Single Cell Deconvolution☆289Mar 4, 2024Updated 2 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- ☆18Jun 13, 2019Updated 6 years ago
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆18Jun 2, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated last year
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Apr 4, 2025Updated 11 months ago
- ☆16Jun 17, 2021Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Feb 28, 2022Updated 4 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆13Jul 19, 2021Updated 4 years ago
- R package for single cell and other data analysis using diffusion maps☆97Nov 9, 2025Updated 4 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Nov 10, 2021Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆234Mar 28, 2024Updated last year
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- ☆34Jun 1, 2022Updated 3 years ago
- Unified access to several second-generation deconvolution methods☆96Jan 5, 2026Updated 2 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆97Nov 30, 2023Updated 2 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Aug 29, 2023Updated 2 years ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆18Jan 5, 2026Updated 2 months ago
- ☆17Sep 16, 2024Updated last year
- Scissor package☆254May 10, 2024Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- Assessing the purity of single cell population☆143Jun 3, 2022Updated 3 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆14Feb 17, 2026Updated last month
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Oct 31, 2024Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆280Mar 15, 2026Updated last week
- Cell types enrichment analysis☆208May 27, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- UHCA☆11Jan 23, 2025Updated last year
- DriverPower☆26Jan 18, 2025Updated last year
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 7 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 4 months ago
- ☆12Mar 19, 2026Updated last week
- CDSeq R Package☆21Jul 1, 2025Updated 8 months ago
- A General Framework for Consensus Partitioning☆64Jan 30, 2026Updated last month