meichendong / SCDC
SCDC
☆42Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SCDC
- Functions for single cell data analysis☆27Updated 3 years ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- scWGCNA☆55Updated 2 years ago
- ☆39Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- ☆58Updated 5 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 6 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆21Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆12Updated 3 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- ☆31Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 2 months ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆28Updated 4 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated 2 weeks ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆68Updated last year
- scRNA-seq cell type identification☆41Updated 5 years ago