mbassalbioinformatics / CnRAP
Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.
☆18Updated 3 years ago
Alternatives and similar repositories for CnRAP
Users that are interested in CnRAP are comparing it to the libraries listed below
Sorting:
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 9 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- ATAC-seq processing pipeline☆33Updated 3 years ago
- ☆47Updated 4 months ago
- Pipeline for Cut&Tag analysis☆21Updated last month
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆31Updated 3 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- ☆32Updated 11 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- ☆55Updated 4 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆20Updated 2 years ago
- ☆32Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 2 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆17Updated 11 months ago
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- scWGCNA☆60Updated 2 years ago