Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.
☆20May 26, 2025Updated last year
Alternatives and similar repositories for CnRAP
Users that are interested in CnRAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆122Jan 15, 2023Updated 3 years ago
- Example scripts for analyzing CUT&RUN datasets☆13Oct 3, 2018Updated 7 years ago
- ☆17Jan 3, 2019Updated 7 years ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Peak caller for CUT&TAG data☆31Aug 18, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Jun 30, 2026Updated last month
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- ☆16Jan 2, 2024Updated 2 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆115Mar 4, 2025Updated last year
- ☆18Mar 12, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆76Aug 3, 2023Updated 3 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- ENCODE ChIP-seq pipeline☆283Feb 15, 2024Updated 2 years ago
- 2022-10-27 R-Ladies St. Louis Presentation☆10Oct 28, 2022Updated 3 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Jun 4, 2023Updated 3 years ago
- ☆34Jul 20, 2018Updated 8 years ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated 2 years ago
- B-cell Hybrid Immune Variant Engine☆12Jun 26, 2026Updated last month
- ☆11Mar 19, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package for robust clustering of single cell RNA sequencing data☆37Mar 25, 2024Updated 2 years ago
- ENCODE ATAC-seq pipeline☆458Jul 18, 2024Updated 2 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- Basics of the OSCA book☆17Sep 29, 2025Updated 10 months ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 2 months ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆20Aug 25, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated last year
- ☆12Jun 16, 2023Updated 3 years ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 4 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Apr 26, 2022Updated 4 years ago
- A no hassle tool for analyzing your favorite CRISPR screen dataset!☆11Apr 16, 2021Updated 5 years ago
- Software and analysis of metabolism studies across multiple cancer types☆11Sep 5, 2017Updated 8 years ago