refresh-bio / KMCLinks
Fast and frugal disk based k-mer counter
☆292Updated 6 months ago
Alternatives and similar repositories for KMC
Users that are interested in KMC are comparing it to the libraries listed below
Sorting:
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆283Updated last year
- Next generation sequencing reads de novo assembler.☆233Updated last year
- ☆256Updated last month
- Classifier for metagenomic sequences☆260Updated this week
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆303Updated last year
- Sequence correction provided by ONT Research☆463Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆262Updated last month
- Synteny and Rearrangement Identifier☆390Updated last month
- 3D de novo assembly (3D DNA) pipeline☆212Updated last year
- Fast and accurate de novo assembler for long reads☆388Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- quality filtering tool for long reads☆346Updated last year
- A tool to circularize genome assemblies☆242Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆347Updated 3 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆281Updated 8 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆223Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆310Updated 4 months ago
- a long read simulator that can imitate many types of read problems☆227Updated 11 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆374Updated 2 weeks ago
- ☆198Updated 2 months ago
- Long read / genome alignment software☆289Updated 7 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆343Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆232Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆511Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆322Updated last year
- Genome assembly evaluation tool☆441Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline☆355Updated last month