refresh-bio / KMCLinks
Fast and frugal disk based k-mer counter
☆314Updated 2 weeks ago
Alternatives and similar repositories for KMC
Users that are interested in KMC are comparing it to the libraries listed below
Sorting:
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆294Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆345Updated 4 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆318Updated 2 months ago
- ☆270Updated 5 months ago
- Next generation sequencing reads de novo assembler.☆239Updated 2 months ago
- A comparison of different Oxford Nanopore basecallers☆316Updated 6 years ago
- Classifier for metagenomic sequences☆267Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- the pangenome graph builder☆468Updated this week
- Synteny and Rearrangement Identifier☆430Updated 7 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- quality filtering tool for long reads☆380Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- Long read / genome alignment software☆311Updated last year
- An overview of all nanopack tools☆272Updated 2 years ago
- adapter trimmer for Oxford Nanopore reads☆376Updated last year
- Sequence correction provided by ONT Research☆488Updated this week
- Eukaryotic Genome Annotation Pipeline☆369Updated 5 months ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆232Updated 5 months ago
- A tool to circularize genome assemblies☆249Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆242Updated last year
- Genome annotation with AUGUSTUS☆323Updated 3 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆374Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- 3D de novo assembly (3D DNA) pipeline☆220Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 3 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- A fast approximate aligner for long DNA sequences☆284Updated last year