refresh-bio / KMC
Fast and frugal disk based k-mer counter
☆286Updated 3 months ago
Alternatives and similar repositories for KMC:
Users that are interested in KMC are comparing it to the libraries listed below
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆279Updated 10 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆355Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆382Updated 10 months ago
- Synteny and Rearrangement Identifier☆371Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆317Updated 9 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆297Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- quality filtering tool for long reads☆324Updated last year
- Classifier for metagenomic sequences☆256Updated 5 months ago
- Toolset for SV simulation, comparison and filtering☆374Updated last year
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆246Updated 2 weeks ago
- A minimap2 frontend for PacBio native data formats☆189Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆322Updated last week
- Program for aligning DNA sequences, a pairwise aligner.☆216Updated 3 weeks ago
- Next generation sequencing reads de novo assembler.☆231Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆392Updated 2 months ago
- ☆251Updated 3 months ago
- adapter trimmer for Oxford Nanopore reads☆353Updated 10 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆320Updated last year
- A tool to circularize genome assemblies☆239Updated 11 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- Finds SNP sites from a multi-FASTA alignment file☆257Updated 4 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆304Updated last month
- An overview of all nanopack tools☆237Updated last year
- Genome annotation with AUGUSTUS☆297Updated 2 months ago
- Read trimming tool for Illumina NGS data.☆131Updated 10 years ago
- ☆200Updated 2 months ago