Fast and frugal disk based k-mer counter: counts 55-mers in 36 gzipped FASTQ files totaling 614 GB (WGS paired-end reads of NA12878, Illumina HiSeq 2000) in under 1.5 h, using 12 threads, 32 GB of RAM, and 389 GB of temporary disk, on a workstation with 2 Intel Xeon E5-2670 v3 CPUs (12 cores each at 2.3 GHz), 128 GiB of RAM, and 2 HDDs in a RAID…
☆342Jul 7, 2026Updated 3 months ago
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