fritzsedlazeck / SURVIVOR
Toolset for SV simulation, comparison and filtering
☆350Updated 9 months ago
Related projects: ⓘ
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆257Updated 10 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆230Updated 3 months ago
- Filtering and trimming of long read sequencing data☆184Updated last year
- Structural variant toolkit for VCFs☆308Updated last week
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆287Updated 6 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆233Updated last month
- An overview of all nanopack tools☆207Updated last year
- Long read based human genomic structural variation detection with cuteSV☆244Updated 3 months ago
- Structural variation and indel detection by local assembly☆230Updated 3 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆187Updated 2 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆340Updated 2 years ago
- A minimap2 frontend for PacBio native data formats☆170Updated 3 months ago
- software tools for haplotype assembly from sequence data☆202Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆249Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆268Updated 4 months ago
- quality filtering tool for long reads☆275Updated last year
- lumpy: a general probabilistic framework for structural variant discovery☆309Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆198Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆226Updated this week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆250Updated 8 months ago
- Annotation and Ranking of Structural Variation☆210Updated 2 weeks ago
- Genome Assembly and Annotation Service code☆199Updated 9 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆208Updated 2 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆169Updated 3 weeks ago
- Genome browser and variant annotation☆257Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆512Updated 2 months ago
- PASA software☆172Updated 9 months ago
- Fast and accurately polish the genome generated by long reads.☆205Updated 10 months ago
- De-Novo Repeat Discovery Tool☆185Updated 5 months ago
- haplotypic duplication identification tool☆204Updated 8 months ago