Recommended Graphtyper pipelines
☆15Feb 22, 2021Updated 5 years ago
Alternatives and similar repositories for graphtyper-pipelines
Users that are interested in graphtyper-pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jan 10, 2022Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- ☆13Jun 21, 2017Updated 8 years ago
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆32Oct 23, 2023Updated 2 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 2 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Aug 16, 2022Updated 3 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- ☆44May 8, 2024Updated last year
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Pan-genome Seed Index☆20Mar 12, 2025Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Updated this week
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- ☆16Jul 16, 2016Updated 9 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- C++ wrapper to tabix indexer☆17Jun 27, 2025Updated 9 months ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- smith-waterman-gotoh alignment algorithm☆17Sep 1, 2017Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago