DecodeGenetics / graphtyper-pipelines
Recommended Graphtyper pipelines
☆14Updated 3 years ago
Alternatives and similar repositories for graphtyper-pipelines:
Users that are interested in graphtyper-pipelines are comparing it to the libraries listed below
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 8 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 7 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- ☆15Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Convert HAL to VG☆21Updated 5 months ago
- ☆16Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 9 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆11Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- ☆21Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- ☆12Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆28Updated 8 months ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago