DecodeGenetics / graphtyper-pipelinesLinks
Recommended Graphtyper pipelines
☆14Updated 4 years ago
Alternatives and similar repositories for graphtyper-pipelines
Users that are interested in graphtyper-pipelines are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- ☆12Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆13Updated 8 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Pan gGnome Viewer☆10Updated last month
- This repo is deprecated. Please use gfatools instead.☆16Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Population-wide Deletion Calling☆35Updated 4 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- ☆11Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- ☆14Updated last year
- ☆26Updated 4 years ago
- ☆28Updated 4 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago