Recommended Graphtyper pipelines
☆15Feb 22, 2021Updated 5 years ago
Alternatives and similar repositories for graphtyper-pipelines
Users that are interested in graphtyper-pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jan 10, 2022Updated 4 years ago
- Population-scale genotyping using pangenome graphs☆203Jan 9, 2025Updated last year
- ☆13Jun 21, 2017Updated 9 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆25Apr 26, 2023Updated 3 years ago
- Structural variant merging tool☆58Aug 23, 2024Updated 2 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 4 years ago
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Pan-genome Seed Index☆20Jul 3, 2026Updated 3 months ago
- Population-wide Deletion Calling☆35Apr 16, 2025Updated last year
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆45May 8, 2024Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- RUFUS k-mer based genomic variant detection☆56Jan 5, 2026Updated 9 months ago
- Enumerating bubbles in pangenome graphs☆16Oct 19, 2026Updated last week
- ☆16Jul 16, 2016Updated 10 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆89Apr 1, 2019Updated 7 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Nextflow Pipelines☆10Aug 15, 2026Updated 2 months ago
- Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees☆13Mar 26, 2019Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- ☆51Aug 27, 2019Updated 7 years ago