Structural variation and indel detection by local assembly
☆256Jul 15, 2026Updated 3 weeks ago
Alternatives and similar repositories for svaba
Users that are interested in svaba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- lumpy: a general probabilistic framework for structural variant discovery☆345Feb 22, 2026Updated 5 months ago
- Structural variant and indel caller for mapped sequencing data☆468Oct 11, 2025Updated 10 months ago
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆139Apr 27, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆528Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- Population-scale genotyping using pangenome graphs☆201Jan 9, 2025Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆265Jun 17, 2024Updated 2 years ago
- Jasmine: SV Merging Across Samples☆260Dec 20, 2024Updated last year
- Annotation and Ranking of Structural Variation☆307Jun 19, 2026Updated last month
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆12Jan 10, 2017Updated 9 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Bayesian haplotype-based mutation calling☆325Feb 13, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆187Apr 12, 2024Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 5 months ago
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Graph realignment tools for structural variants☆170Dec 8, 2022Updated 3 years ago
- Structural variant toolkit for VCFs☆421May 22, 2026Updated 2 months ago
- Long read based human genomic structural variation detection with cuteSV☆292Jul 30, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated 3 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆236Feb 17, 2022Updated 4 years ago
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 3 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated last month
- ABRA2☆97Dec 2, 2022Updated 3 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Jul 2, 2026Updated last month
- ☆51Aug 27, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A structural variation pipeline for short-read sequencing☆205Updated this week
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- software tools for haplotype assembly from sequence data☆232Feb 9, 2025Updated last year
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- Structural variation caller using third generation sequencing☆672Jul 20, 2026Updated 3 weeks ago
- BAM Statistics, Feature Counting and Annotation☆155Updated this week
- A genome browser designed for complex structural variants and long reads.☆305Jun 6, 2025Updated last year