walaj / svabaLinks
Structural variation and indel detection by local assembly
☆249Updated 2 months ago
Alternatives and similar repositories for svaba
Users that are interested in svaba are comparing it to the libraries listed below
Sorting:
- VarDict☆200Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 5 months ago
- A structural variation pipeline for short-read sequencing☆195Updated this week
- Annotation and Ranking of Structural Variation☆267Updated last month
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆259Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆206Updated 4 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆235Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- A tool for estimating repeat sizes☆198Updated last year
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- software tools for haplotype assembly from sequence data☆223Updated 9 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Jasmine: SV Merging Across Samples☆230Updated 10 months ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆199Updated 3 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- ABRA2☆95Updated 2 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆208Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Updated last year
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago