Structural variation and indel detection by local assembly
☆254Mar 17, 2026Updated last week
Alternatives and similar repositories for svaba
Users that are interested in svaba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆339Feb 22, 2026Updated last month
- Structural variant and indel caller for mapped sequencing data☆460Oct 11, 2025Updated 5 months ago
- Toolset for SV simulation, comparison and filtering☆413Dec 1, 2023Updated 2 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Sep 16, 2025Updated 6 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆508Feb 26, 2026Updated 3 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Jasmine: SV Merging Across Samples☆244Dec 20, 2024Updated last year
- Annotation and Ranking of Structural Variation☆288Updated this week
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Structural variant detection and association testing☆108Feb 2, 2023Updated 3 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- Scalable gVCF merging and joint variant calling for population sequencing projects☆179Apr 12, 2024Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 3 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- Structural variant toolkit for VCFs☆401Updated this week
- Long read based human genomic structural variation detection with cuteSV☆281Sep 30, 2025Updated 5 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Strelka2 germline and somatic small variant caller☆390Dec 29, 2021Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Bayesian genotyper for structural variants☆136Mar 6, 2021Updated 5 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆399Aug 30, 2025Updated 6 months ago
- ABRA2☆95Dec 2, 2022Updated 3 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆234Feb 17, 2022Updated 4 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Mar 23, 2025Updated last year
- ☆51Aug 27, 2019Updated 6 years ago
- A structural variation pipeline for short-read sequencing☆201Updated this week
- software tools for haplotype assembly from sequence data☆229Feb 9, 2025Updated last year
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 9 months ago
- Structural variation caller using third generation sequencing☆639Mar 10, 2026Updated last week
- BAM Statistics, Feature Counting and Annotation☆152Mar 16, 2026Updated last week
- A genome browser designed for complex structural variants and long reads.☆298Jun 6, 2025Updated 9 months ago