walaj / svaba
Structural variation and indel detection by local assembly
☆244Updated last week
Alternatives and similar repositories for svaba:
Users that are interested in svaba are comparing it to the libraries listed below
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- Bayesian genotyper for structural variants☆128Updated 4 years ago
- VarDict☆194Updated last year
- A structural variation pipeline for short-read sequencing☆183Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆248Updated 9 months ago
- Jasmine: SV Merging Across Samples☆207Updated 3 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆157Updated 6 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆207Updated 3 weeks ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆266Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆144Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆212Updated 8 months ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆138Updated 3 weeks ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆215Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 4 months ago
- Annotation and Ranking of Structural Variation☆246Updated 2 weeks ago
- Toolset for SV simulation, comparison and filtering☆374Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆268Updated 3 weeks ago
- Structural variant toolkit for VCFs☆346Updated 2 weeks ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- ABRA2☆92Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- software tools for haplotype assembly from sequence data☆217Updated last month