DecodeGenetics / svimmerLinks
Structural variant merging tool
☆52Updated 10 months ago
Alternatives and similar repositories for svimmer
Users that are interested in svimmer are comparing it to the libraries listed below
Sorting:
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- perSVade: personalized Structural Variation detection☆39Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- ☆51Updated 5 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆22Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- for visual evaluation of read support for structural variation☆54Updated last year
- ☆41Updated 4 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- ☆39Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- ☆41Updated 9 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago