DecodeGenetics / svimmerLinks
Structural variant merging tool
☆49Updated 9 months ago
Alternatives and similar repositories for svimmer
Users that are interested in svimmer are comparing it to the libraries listed below
Sorting:
- A tutorial on structural variant calling for short read sequencing data☆38Updated 7 months ago
- Variant annotation and merging pipeline☆34Updated this week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆51Updated 5 years ago
- ☆35Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆34Updated 2 weeks ago
- ☆22Updated 4 years ago
- ☆80Updated 3 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- ☆30Updated 9 months ago
- ☆40Updated 3 months ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- ☆28Updated 3 weeks ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- Algorithm to detect germline and de novo transposon insertions☆28Updated last month