structural variant calling and genotyping with existing tools, but, smoothly.
☆266Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for smoove
Users that are interested in smoove are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 2 months ago
- Structural variant toolkit for VCFs☆414May 22, 2026Updated 3 weeks ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Toolset for SV simulation, comparison and filtering☆420Dec 1, 2023Updated 2 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- Population-scale genotyping using pangenome graphs☆199Jan 9, 2025Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆525Updated this week
- Annotation and Ranking of Structural Variation☆300Jun 9, 2026Updated last week
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 9 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆284May 21, 2025Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆407May 1, 2026Updated last month
- Jasmine: SV Merging Across Samples☆253Dec 20, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated 8 months ago
- Structural variation and indel detection by local assembly☆256Jun 7, 2026Updated last week
- TIDDIT - structural variant calling☆79Mar 22, 2026Updated 2 months ago
- Bayesian haplotype-based mutation calling☆324Feb 13, 2026Updated 4 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆858May 2, 2026Updated last month
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆322Apr 24, 2026Updated last month
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆215Mar 16, 2026Updated 3 months ago
- Structural variation caller using third generation sequencing☆660May 18, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- genetic variant expressions, annotation, and filtering for great good.☆275May 12, 2026Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 months ago
- ☆51Aug 27, 2019Updated 6 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆185Apr 12, 2024Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated 2 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Toolkit for calling structural variants using short or long reads☆115Jun 8, 2026Updated last week
- Long read based human genomic structural variation detection with cuteSV☆289Mar 26, 2026Updated 2 months ago
- sort genomic data☆36Nov 7, 2025Updated 7 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆150Feb 17, 2026Updated 4 months ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆680Mar 20, 2026Updated 2 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated last year