structural variant calling and genotyping with existing tools, but, smoothly.
☆265Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for smoove
Users that are interested in smoove are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 4 months ago
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 2 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆345Feb 22, 2026Updated 5 months ago
- Plot structural variant signals from many BAMs and CRAMs☆572Jul 13, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- Population-scale genotyping using pangenome graphs☆201Jan 9, 2025Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆528Updated this week
- Annotation and Ranking of Structural Variation☆307Aug 11, 2026Updated last week
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 11 months ago
- Jasmine: SV Merging Across Samples☆260Dec 20, 2024Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆284May 21, 2025Updated last year
- Structural variant and indel caller for mapped sequencing data☆468Oct 11, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 2 months ago
- Structural variation and indel detection by local assembly☆256Jul 15, 2026Updated last month
- Bayesian haplotype-based mutation calling☆325Feb 13, 2026Updated 6 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆869May 2, 2026Updated 3 months ago
- TIDDIT - structural variant calling☆80Jul 20, 2026Updated 3 weeks ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆332Jul 20, 2026Updated 3 weeks ago
- Graph realignment tools for structural variants☆170Dec 8, 2022Updated 3 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆217Jun 23, 2026Updated last month
- Structural variation caller using third generation sequencing☆674Jul 20, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- genetic variant expressions, annotation, and filtering for great good.☆275May 12, 2026Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Nov 5, 2020Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 5 months ago
- ☆51Aug 27, 2019Updated 6 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆187Apr 12, 2024Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Jun 25, 2026Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Toolkit for calling structural variants using short or long reads☆115Jul 14, 2026Updated last month
- sort genomic data☆36Nov 7, 2025Updated 9 months ago
- Long read based human genomic structural variation detection with cuteSV☆292Jul 30, 2026Updated 2 weeks ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆152Feb 17, 2026Updated 6 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆683Mar 20, 2026Updated 4 months ago
- The next version of bwa-mem☆857Oct 15, 2025Updated 10 months ago