hall-lab / svtoolsLinks
Tools for processing and analyzing structural variants.
☆153Updated 3 years ago
Alternatives and similar repositories for svtools
Users that are interested in svtools are comparing it to the libraries listed below
Sorting:
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Structural variation and indel detection by local assembly☆247Updated 2 weeks ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- software tools for haplotype assembly from sequence data☆219Updated 5 months ago
- A tool set for short variant discovery in genetic sequence data.☆199Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆154Updated 4 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Microassembly based somatic variant caller for NGS data☆155Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆153Updated 2 years ago
- Annotation and Ranking of Structural Variation☆261Updated last week
- Population-scale genotyping using pangenome graphs☆186Updated 6 months ago
- WisecondorX — An evolved WISECONDOR☆99Updated 2 weeks ago
- ABRA2☆92Updated 2 years ago
- VarDict☆198Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆189Updated this week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆269Updated last month
- Gene fusion detection and visualization☆128Updated 3 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated this week
- Scalable gVCF merging and joint variant calling for population sequencing projects☆163Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆170Updated 5 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆202Updated 4 years ago