hall-lab / svtoolsLinks
Tools for processing and analyzing structural variants.
☆154Updated 3 years ago
Alternatives and similar repositories for svtools
Users that are interested in svtools are comparing it to the libraries listed below
Sorting:
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- A tool set for short variant discovery in genetic sequence data.☆201Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- software tools for haplotype assembly from sequence data☆222Updated 7 months ago
- ABRA2☆92Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆170Updated last year
- Platypus Variant Caller☆108Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆158Updated 6 months ago
- VarDict☆198Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆257Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Jasmine: SV Merging Across Samples☆225Updated 8 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆116Updated 2 months ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- A structural variation pipeline for short-read sequencing☆194Updated this week
- Population-scale genotyping using pangenome graphs☆190Updated 8 months ago
- WisecondorX — An evolved WISECONDOR☆102Updated 3 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆272Updated 3 months ago
- ☆123Updated last month
- Scalable gVCF merging and joint variant calling for population sequencing projects☆166Updated last year
- BAM Statistics, Feature Counting and Annotation☆149Updated this week
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆227Updated 3 years ago