hall-lab / svtools
Tools for processing and analyzing structural variants.
☆150Updated 2 years ago
Alternatives and similar repositories for svtools:
Users that are interested in svtools are comparing it to the libraries listed below
- Bayesian genotyper for structural variants☆128Updated 4 years ago
- Structural variation and indel detection by local assembly☆244Updated last week
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- VarDict☆194Updated last year
- ABRA2☆92Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆183Updated this week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆158Updated 7 months ago
- Jasmine: SV Merging Across Samples☆208Updated 3 months ago
- software tools for haplotype assembly from sequence data☆217Updated last month
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Graph realignment tools for structural variants☆156Updated 2 years ago
- Annotation and Ranking of Structural Variation☆248Updated 2 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆140Updated 3 weeks ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆248Updated 9 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆267Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆144Updated last year
- Gene fusion detection and visualization☆122Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆156Updated 11 months ago
- A tool for profiling long STRs from short reads☆96Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- VCF-kit: Assorted utilities for the variant call format☆128Updated last month
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- ☆119Updated 4 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆215Updated 3 years ago