Tools for processing and analyzing structural variants.
☆157May 2, 2022Updated 3 years ago
Alternatives and similar repositories for svtools
Users that are interested in svtools are comparing it to the libraries listed below
Sorting:
- Bayesian genotyper for structural variants☆136Mar 6, 2021Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Toolset for SV simulation, comparison and filtering☆413Dec 1, 2023Updated 2 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- Structural variant toolkit for VCFs☆401Updated this week
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆339Feb 22, 2026Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- Support Vector Structural Variation Genotyper☆58May 29, 2020Updated 5 years ago
- Jasmine: SV Merging Across Samples☆244Dec 20, 2024Updated last year
- Structural variation and indel detection by local assembly☆254Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Structural variant detection and association testing☆108Feb 2, 2023Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 8 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆281May 21, 2025Updated 10 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Structural variant and indel caller for mapped sequencing data☆460Oct 11, 2025Updated 5 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year
- A structural variation pipeline for short-read sequencing☆201Updated this week
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated 7 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 7 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 5 years ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆399Aug 30, 2025Updated 6 months ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Feb 26, 2026Updated 3 weeks ago
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated 2 weeks ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- Structural variation caller using third generation sequencing☆639Mar 10, 2026Updated last week
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆669Oct 31, 2025Updated 4 months ago
- The Modular Aligner and The Modular SV Caller☆46Jul 18, 2023Updated 2 years ago