nhansen / SVanalyzerLinks
Tools for the analysis of structural variation in genomes
☆81Updated last year
Alternatives and similar repositories for SVanalyzer
Users that are interested in SVanalyzer are comparing it to the libraries listed below
Sorting:
- Toolkit for calling structural variants using short or long reads☆110Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆104Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- VarIant SimulatOR for short, long and linked reads☆49Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- ☆83Updated 8 months ago
- Data from the Human PanGenomics Project☆61Updated 4 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 5 years ago
- Collection of tools for the analysis of CpG data☆97Updated 4 months ago
- Phased assembly variant caller☆129Updated 11 months ago
- Structural Variant Index☆75Updated 11 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- Copy number caller for long read data including SNV utilization☆68Updated 7 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- SRF: Satellite Repeat Finder☆99Updated last year
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆37Updated last month
- Application of pan-genome for population☆115Updated 3 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆114Updated last year