nhansen / SVanalyzer
Tools for the analysis of structural variation in genomes
☆78Updated last year
Alternatives and similar repositories for SVanalyzer:
Users that are interested in SVanalyzer are comparing it to the libraries listed below
- Toolkit for calling structural variants using short or long reads☆101Updated this week
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- ☆39Updated 11 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Phased assembly variant caller☆112Updated 4 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Structural Variant Index☆72Updated 4 months ago
- Methylation Phasing for Nanopore Sequencing☆47Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆33Updated last week
- ☆79Updated last month
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- Set of tools to manipulate and visualize modified base bam files☆53Updated 2 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- ☆56Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last week
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 10 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆97Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆115Updated this week
- Structural Variant Identification Method using Genome Assemblies☆108Updated 2 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- PGR-TK: Pangenome Research Tool Kit☆98Updated 11 months ago