Illumina / ExpansionHunterLinks
A tool for estimating repeat sizes
☆199Updated last year
Alternatives and similar repositories for ExpansionHunter
Users that are interested in ExpansionHunter are comparing it to the libraries listed below
Sorting:
- Annotation and Ranking of Structural Variation☆267Updated last month
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 6 months ago
- A structural variation pipeline for short-read sequencing☆195Updated this week
- VarDict☆200Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- Structural variation and indel detection by local assembly☆249Updated 2 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- Jasmine: SV Merging Across Samples☆231Updated 11 months ago
- A minimap2 frontend for PacBio native data formats☆205Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- ☆139Updated 3 weeks ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆208Updated last month
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆283Updated 9 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆260Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆206Updated 4 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- software tools for haplotype assembly from sequence data☆224Updated 9 months ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆248Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆226Updated 4 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- Bayesian haplotype-based mutation calling☆320Updated last month
- The nimble & robust variant annotator☆188Updated last year
- Full-Length Alternative Isoform analysis of RNA☆240Updated this week
- a lightweight bam file depth statistical tool☆157Updated last year