Bayesian genotyper for structural variants
☆136Apr 13, 2026Updated last month
Alternatives and similar repositories for svtyper
Users that are interested in svtyper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Toolset for SV simulation, comparison and filtering☆417Dec 1, 2023Updated 2 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- Support Vector Structural Variation Genotyper☆59May 29, 2020Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- annotate a VCF with other VCFs/BEDs/tabixed files☆404May 1, 2026Updated 3 weeks ago
- Structural variation and indel detection by local assembly☆255May 14, 2026Updated last week
- Structural variant toolkit for VCFs☆411Updated this week
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆517Updated this week
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 9 years ago
- Structural variant and indel caller for mapped sequencing data☆465Oct 11, 2025Updated 7 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆38Jun 19, 2020Updated 5 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Dec 4, 2017Updated 8 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 months ago
- Structural Variant Index☆76Dec 13, 2024Updated last year
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆851May 2, 2026Updated 3 weeks ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated last year