hall-lab / svtyperLinks
Bayesian genotyper for structural variants
☆134Updated 4 years ago
Alternatives and similar repositories for svtyper
Users that are interested in svtyper are comparing it to the libraries listed below
Sorting:
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Jasmine: SV Merging Across Samples☆225Updated 9 months ago
- Structural variation and indel detection by local assembly☆246Updated this week
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆158Updated 6 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- ☆123Updated last month
- A tool for somatic structural variant calling using long reads☆145Updated last month
- ABRA2☆92Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆112Updated last year
- Hierarchical Alignment Format☆171Updated last week
- BAM Statistics, Feature Counting and Annotation☆149Updated this week
- software tools for haplotype assembly from sequence data☆222Updated 7 months ago
- Graph realignment tools for structural variants☆161Updated 2 years ago
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- Tools for plotting methylation data in various ways☆160Updated last month
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Structural Variant Identification Method using Long Reads☆173Updated 4 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆124Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆158Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- SV caller for nanopore data☆92Updated 5 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆257Updated last year
- SV detection from paired end reads mapping☆117Updated 6 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago