hall-lab / svtyper
Bayesian genotyper for structural variants
☆126Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for svtyper
- Tools for processing and analyzing structural variants.☆149Updated 2 years ago
- Jasmine: SV Merging Across Samples☆180Updated last year
- Structural variation and indel detection by local assembly☆233Updated 5 months ago
- phasing and Allele Specific Expression from RNA-seq☆110Updated 3 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆136Updated this week
- ABRA2☆90Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆151Updated 2 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆129Updated last week
- A tool to identify, orient, trim and rescue full length cDNA reads☆80Updated 2 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆124Updated 3 years ago
- SV caller for nanopore data☆90Updated 4 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆192Updated last week
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated last week
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated 2 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 5 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆234Updated 4 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆93Updated 5 months ago
- Microassembly based somatic variant caller for NGS data☆153Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- VarDict☆187Updated 10 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- A tool for somatic structural variant calling using long reads☆102Updated this week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Python programs for processing GFF3 files☆95Updated 7 months ago