hall-lab / svtyper
Bayesian genotyper for structural variants
☆131Updated 4 years ago
Alternatives and similar repositories for svtyper:
Users that are interested in svtyper are comparing it to the libraries listed below
- Tools for processing and analyzing structural variants.☆151Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 11 months ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 9 months ago
- Structural variation and indel detection by local assembly☆244Updated last month
- Jasmine: SV Merging Across Samples☆210Updated 4 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- A tool for somatic structural variant calling using long reads☆126Updated last week
- ABRA2☆92Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆142Updated last month
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 5 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆184Updated 11 months ago
- ☆120Updated 5 months ago
- VarDict☆197Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Hierarchical Alignment Format☆168Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated this week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆149Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 7 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆86Updated 6 months ago
- SV caller for nanopore data☆91Updated 4 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆248Updated 10 months ago
- Graph realignment tools for structural variants☆156Updated 2 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- Structural Variant Identification Method using Long Reads☆171Updated 3 years ago
- Gene fusion detection and visualization☆122Updated 3 years ago