Structural Variant Index
☆76Dec 13, 2024Updated last year
Alternatives and similar repositories for stix
Users that are interested in stix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- Kmer Analysis of Pileups for Genotyping☆38Mar 6, 2026Updated last month
- Interval data structure☆236Mar 18, 2026Updated 3 weeks ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Structural variant toolkit for VCFs☆404Mar 21, 2026Updated 2 weeks ago
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- Toolset for SV simulation, comparison and filtering☆415Dec 1, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆84Mar 3, 2025Updated last year
- ☆13Jun 21, 2017Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 6 years ago
- ☆102Apr 22, 2024Updated last year
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Updated this week
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆307Updated this week
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- ☆46Jun 21, 2020Updated 5 years ago
- A tool for estimating repeat sizes☆208Jan 30, 2024Updated 2 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- A read extraction and realignment tool for next generation sequencing data☆106Oct 29, 2022Updated 3 years ago
- Bayesian genotyper for structural variants☆136Mar 6, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Structural variant detection and association testing☆108Feb 2, 2023Updated 3 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆563Jul 13, 2024Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- Transformer-based sequence correction method for genome assembly polishing☆100Mar 11, 2025Updated last year