Structural Variant Index
☆76Jul 1, 2026Updated last month
Alternatives and similar repositories for stix
Users that are interested in stix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- extract SV signal from a BAM☆10Jul 26, 2018Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated 3 weeks ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interval data structure☆234Mar 18, 2026Updated 4 months ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Graph realignment tools for structural variants☆170Dec 8, 2022Updated 3 years ago
- Structural variant toolkit for VCFs☆420May 22, 2026Updated 2 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆85Mar 3, 2025Updated last year
- ☆13Jun 21, 2017Updated 9 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆17Jul 21, 2026Updated 2 weeks ago
- ☆102Apr 22, 2024Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Nov 5, 2020Updated 5 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 3 months ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- structural variant calling and genotyping with existing tools, but, smoothly.☆265Jun 17, 2024Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 9 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- A tool for estimating repeat sizes☆217Jan 30, 2024Updated 2 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 5 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆332Jul 20, 2026Updated 3 weeks ago
- A read extraction and realignment tool for next generation sequencing data☆107Oct 29, 2022Updated 3 years ago
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Unfazed by genomic variant phasing☆28May 26, 2024Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆23Nov 22, 2019Updated 6 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago