ryanlayer / stixLinks
Structural Variant Index
☆75Updated 11 months ago
Alternatives and similar repositories for stix
Users that are interested in stix are comparing it to the libraries listed below
Sorting:
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆111Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- ☆83Updated 8 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- ☆44Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated 3 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Detect novel (and reference) STR expansions from short-read data☆68Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆104Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- UCSC Nanopore☆44Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Data and information about the Polaris study☆54Updated 6 years ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- Copy number caller for long read data including SNV utilization☆68Updated 7 months ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- SV caller for nanopore data☆92Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago