AllenInstitute / scrattch.ioLinks
Functions for handling RNA-seq files and formats as input and output for scrattch functions.
☆11Updated 5 months ago
Alternatives and similar repositories for scrattch.io
Users that are interested in scrattch.io are comparing it to the libraries listed below
Sorting:
- ☆17Updated 3 years ago
- Analysis code and results for dreamlet☆10Updated 6 months ago
- pipelines to process scRNA-seq data☆12Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- ☆19Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 4 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated 2 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19Updated 4 years ago
- scRNA-seq data visualization from scrattch☆29Updated 5 months ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 6 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆45Updated last year
- ☆26Updated 8 months ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Updated 3 years ago
- ☆13Updated 7 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated last week
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆29Updated last week
- Pairwise Hierarchical Model☆20Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 7 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 6 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Updated 5 years ago