MSingerLab / COMETSCLinks
COMET Single-Cell Marker Detection tool
☆31Updated 3 years ago
Alternatives and similar repositories for COMETSC
Users that are interested in COMETSC are comparing it to the libraries listed below
Sorting:
- ☆41Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- ☆28Updated 6 years ago
- An R-based interface for loom files☆66Updated 5 years ago
- Single-cell Case Control Analysis☆51Updated 8 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- ☆37Updated 9 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- post-clustering differential expression test☆35Updated 6 years ago
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 4 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆84Updated 11 months ago
- Clone of the Bioconductor repository for the scran package.☆43Updated 10 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆53Updated 4 years ago
- ☆55Updated 4 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆24Updated 2 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago