PMBio / MuDataSeuratLinks
.h5mu files interface for Seurat
☆32Updated last year
Alternatives and similar repositories for MuDataSeurat
Users that are interested in MuDataSeurat are comparing it to the libraries listed below
Sorting:
- iterative clustering pipeline of big single cell datasets.☆33Updated last week
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆50Updated 3 weeks ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- ☆29Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Single-cell Case Control Analysis☆52Updated last week
- ☆40Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 10 months ago
- ☆35Updated 6 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated 2 weeks ago
- ☆29Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 6 months ago
- scWGCNA☆61Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆21Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 3 weeks ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month