PMBio / MuDataSeuratLinks
.h5mu files interface for Seurat
☆32Updated 2 years ago
Alternatives and similar repositories for MuDataSeurat
Users that are interested in MuDataSeurat are comparing it to the libraries listed below
Sorting:
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- ☆37Updated 8 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated this week
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated this week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- ☆33Updated 8 months ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- ☆43Updated last month
- ☆29Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated last week
- ☆39Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- ☆43Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- Multi-resolution Variational Inference☆22Updated 3 weeks ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆87Updated 3 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated last month
- A method to rapidly assess cell type identity using both functional and random gene sets☆40Updated 10 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 3 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year