HumanCellAtlas / sctoolsLinks
Utilities for large scale distributed single cell data processing
☆24Updated last week
Alternatives and similar repositories for sctools
Users that are interested in sctools are comparing it to the libraries listed below
Sorting:
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆42Updated 3 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 10 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Scripts for using scanpy☆39Updated 3 months ago
- Builds a PEP from SRA or GEO accessions☆54Updated last week
- Python bindings to UCSC BigWig and BigBed library☆35Updated 2 weeks ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆77Updated last month
- machine-readable file format for genomic library sequence and structure☆126Updated 4 months ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆51Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated last month
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- ☆48Updated last week
- ☆37Updated last week
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated last month
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated 3 weeks ago
- ☆20Updated 6 months ago
- Biology-centered data-driven quality control for scRNA-seq☆19Updated 2 years ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆29Updated last month
- Single-cell copy number calling and event history reconstruction.☆28Updated last year
- Tools for working with BUS files☆102Updated 8 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Updated 6 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- High-definition modeling of chromatin + transcriptomics data☆26Updated 9 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆17Updated last year
- ☆18Updated last year