Utilities for large scale distributed single cell data processing
☆24Jan 20, 2026Updated 7 months ago
Alternatives and similar repositories for sctools
Users that are interested in sctools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- A performant scientific image visualization system.☆36Aug 5, 2026Updated last month
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆20Sep 16, 2021Updated 5 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Developers Dashboard| Issues and Bugs aggregation | Gsoc 2015 project | Debian Community☆11Jul 10, 2016Updated 10 years ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- Effortless Pixi Project Management Integration in VSCode☆33Apr 26, 2026Updated 4 months ago
- ☆12Jul 6, 2023Updated 3 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆184Dec 18, 2021Updated 4 years ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆19Nov 25, 2022Updated 3 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated last year
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Jan 31, 2023Updated 3 years ago
- Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing☆27Jul 20, 2025Updated last year
- ☆50Mar 1, 2018Updated 8 years ago
- ☆11Jan 29, 2025Updated last year
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆59May 5, 2021Updated 5 years ago
- ☆10Aug 29, 2023Updated 3 years ago
- ☆13Dec 1, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆50Sep 2, 2026Updated 2 weeks ago
- Rawls service for DSDE☆27Sep 1, 2026Updated 2 weeks ago
- machine-readable file format for genomic library sequence and structure☆131Jul 15, 2026Updated 2 months ago
- ☆15May 22, 2026Updated 3 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 7 months ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- Dataloader for applying sequence models to personalized genomics☆29Updated this week
- Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI☆18May 19, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- FireCloud user interface for web browsers.☆20Aug 22, 2025Updated last year
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 5 months ago
- epigenome analysis to rank transcription factors☆33Feb 2, 2023Updated 3 years ago
- ☆12Mar 17, 2023Updated 3 years ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Sep 8, 2026Updated last week
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Sep 8, 2026Updated last week