HumanCellAtlas / sctoolsLinks
Utilities for large scale distributed single cell data processing
☆24Updated 2 weeks ago
Alternatives and similar repositories for sctools
Users that are interested in sctools are comparing it to the libraries listed below
Sorting:
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 10 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆42Updated 3 months ago
- Single-cell copy number calling and event history reconstruction.☆28Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- ☆37Updated 2 weeks ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆70Updated last week
- Scripts for using scanpy☆39Updated 3 months ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆29Updated last month
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated last month
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 2 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Simple walk-throughs of interacting with the DCP as a downstream data consumer.☆17Updated this week
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆18Updated last year
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- Red-C data processing☆15Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- machine-readable file format for genomic library sequence and structure☆126Updated 5 months ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last month
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 8 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated last week
- Toolkit for single-cell DNA methylation analysis.☆46Updated 2 weeks ago
- Python bindings to UCSC BigWig and BigBed library☆35Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year