HumanCellAtlas / sctools
Utilities for large scale distributed single cell data processing
☆24Updated 2 months ago
Related projects: ⓘ
- ☆37Updated this week
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated last year
- Biology-centered data-driven quality control for scRNA-seq☆15Updated last year
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆41Updated last year
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆47Updated 6 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆44Updated 2 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆51Updated 4 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated last year
- Simple walk-throughs of interacting with the DCP as a downstream data consumer.☆17Updated 3 weeks ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Python bindings to UCSC BigWig and BigBed library☆29Updated last month
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆67Updated 9 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- ☆34Updated 4 months ago
- epigenome analysis to rank transcription factors☆28Updated last year
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- snakemake pipeline for Hi-C post-processing☆21Updated 2 months ago
- Scripts for using scanpy☆30Updated 3 weeks ago
- Python package to perform normalization and variance-stabilization of single-cell data☆21Updated 2 years ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆49Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆48Updated last month
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆26Updated this week
- .h5mu files interface for Seurat☆24Updated 9 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆77Updated 2 weeks ago
- Finding gene expression states in scRNA-seq data☆46Updated 5 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 3 months ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆31Updated 2 years ago