reimandlab / ActivePathwaysLinks
Integrative pathway enrichment analysis of multivariate omics data
☆120Updated 6 months ago
Alternatives and similar repositories for ActivePathways
Users that are interested in ActivePathways are comparing it to the libraries listed below
Sorting:
- ☆63Updated 5 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆99Updated last year
- Simplify functional enrichment results☆123Updated last week
- GLASS consortium☆42Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Multiscale embedded gene co-expression network analysis☆57Updated 2 years ago
- An R interface to enrichR☆94Updated last year
- ☆90Updated 5 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Updated 7 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆100Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Updated 2 years ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆77Updated this week
- Bayesian network plot for the enrichment analysis results☆67Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Updated 7 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆83Updated 8 months ago
- ☆120Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 6 years ago