Alternatives and similar repositories for ActivePathways:

Users that are interested in ActivePathways are comparing it to the libraries listed below

• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• liulab-dfci / RIMA_pipeline
  ☆79Updated last year
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆93Updated 6 months ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆77Updated 2 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated 11 months ago
• rpolicastro / scProportionTest
  ☆61Updated last year
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆43Updated 4 years ago
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆80Updated last week
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆72Updated 6 years ago
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆69Updated 2 weeks ago
• akdess / CaSpER
  ☆85Updated 4 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆75Updated last month
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆65Updated 3 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 4 years ago
• morrislab / qapa
  RNA-seq Quantification of Alternative Polyadenylation
  ☆46Updated last year
• jianhong / ATACseqQC
  ATAC-seq Quality Control
  ☆23Updated 3 months ago
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆48Updated 4 years ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆114Updated 7 months ago
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆60Updated 2 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆57Updated 4 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆52Updated 3 years ago
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆80Updated 2 months ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆50Updated 5 years ago
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆30Updated last year
• BioinformaticsFMRP / PanCanStem_Web
  ☆30Updated 3 years ago
• TrinityCTAT / Trinity_CTAT
  ☆116Updated last year