pachterlab / kiteLinks
kallisto index tag extractor
☆20Updated 5 years ago
Alternatives and similar repositories for kite
Users that are interested in kite are comparing it to the libraries listed below
Sorting:
- scover☆23Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Collection of useful methods for single cell analysis☆14Updated 9 months ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆20Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- ☆14Updated 6 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- ☆28Updated 6 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆15Updated 3 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- ☆29Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- R package for gene selection using k-NN graphs.☆13Updated last year
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year