R package for robust clustering of single cell RNA sequencing data
☆37Mar 25, 2024Updated 2 years ago
Alternatives and similar repositories for RCAv2
Users that are interested in RCAv2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆23Jul 19, 2022Updated 4 years ago
- R package for specialised analysis of single cell data☆42Oct 14, 2022Updated 4 years ago
- Learning gene-specific regulatory elements from epigenetic data☆11May 7, 2025Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- ☆20Aug 28, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆37Apr 13, 2021Updated 5 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- ☆13Aug 11, 2025Updated last year
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆14May 4, 2022Updated 4 years ago
- Gene set scoring for single-cell data☆215Sep 8, 2026Updated last month
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Batch balanced KNN☆180Oct 11, 2023Updated 3 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- CausalTrail - a tool for performing causal reasoning using the do-calculus☆12Jun 9, 2021Updated 5 years ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆63Sep 17, 2024Updated 2 years ago
- ☆17Jan 3, 2021Updated 5 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- ☆17Jul 12, 2024Updated 2 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- scDataviz: single cell dataviz and downstream analyses☆68Sep 24, 2021Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆41Jul 10, 2023Updated 3 years ago
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆26Jan 12, 2024Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Low-dimensional Projection of Single Cell Velocity☆29Aug 26, 2022Updated 4 years ago
- ☆23May 21, 2026Updated 5 months ago
- ☆12May 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for removing doublets from single-cell RNA-seq data☆76Dec 2, 2020Updated 5 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 6 months ago
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- Mouse cell atlas☆63Apr 18, 2020Updated 6 years ago
- A docker image for single-cell analysis☆106Sep 10, 2026Updated last month