Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
☆19Nov 29, 2022Updated 3 years ago
Alternatives and similar repositories for MAPIT
Users that are interested in MAPIT are comparing it to the libraries listed below
Sorting:
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 9 months ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Apr 8, 2023Updated 2 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- ☆29Aug 7, 2025Updated 6 months ago
- DiffNetFDR☆10Sep 12, 2018Updated 7 years ago
- CellRank 2's reproducibility repository.☆15Sep 4, 2024Updated last year
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- ☆11Nov 12, 2025Updated 3 months ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- A shiny app for metacell analysis☆10Updated this week
- ☆11May 10, 2025Updated 9 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- Demographic analysis of Brassica oleracea☆10Jan 30, 2026Updated last month
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 4 years ago
- ☆11Aug 2, 2025Updated 7 months ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Sep 2, 2021Updated 4 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- ☆14Jun 6, 2023Updated 2 years ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- ☆24Jun 9, 2017Updated 8 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 10 months ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆25Aug 17, 2024Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19May 18, 2025Updated 9 months ago
- ☆17Oct 23, 2025Updated 4 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- A step-by-step guide to setting up llama.cpp with ROCm on AMD APUs☆19Jan 2, 2025Updated last year