lorinanthony / MAPIT
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for MAPIT
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- R-package: Calculation of haplotype blocks and libraries☆27Updated 7 months ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆9Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last week
- Sweep Inference Framework (controlling for correlation)☆28Updated 3 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 3 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 5 years ago
- The MafFilter genome alignment processor☆17Updated last month
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆20Updated 3 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- ☆10Updated 9 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆26Updated 3 months ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- A repo contains historical and updated MTEC libraries.☆15Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 4 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆13Updated 4 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Research repo for Yang et al., 2017 paper.☆9Updated 4 years ago
- ☆11Updated 2 years ago