lorinanthony / MAPITLinks
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
☆15Updated 2 years ago
Alternatives and similar repositories for MAPIT
Users that are interested in MAPIT are comparing it to the libraries listed below
Sorting:
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- Repository for pipeline code☆26Updated last year
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Tools for merging Tandem Repeat VCF files☆34Updated 5 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- Structural variant merging tool☆55Updated last year
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- This is the Haplotypo repository☆22Updated last year
- Easy genomic regions for short-read variant calling☆44Updated last month
- ☆23Updated 9 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- R code to compute the Singleton Density Score (SDS)☆31Updated 9 years ago
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated 2 weeks ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- machine learning applications for dadi☆15Updated 8 months ago
- Structural variant (SV) analysis tools☆38Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 4 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 5 years ago