EricSDavis / mariner
Explore the Hi-Cs
☆11Updated last year
Alternatives and similar repositories for mariner:
Users that are interested in mariner are comparing it to the libraries listed below
- ☆26Updated 2 weeks ago
- ☆28Updated 4 months ago
- ☆17Updated 10 months ago
- ☆23Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated 11 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Pan-transcriptomic phenotyping☆16Updated last week
- Blazing fast toolkit to work with .hic and .cool files☆30Updated last week
- A program for the analysis of single cell nanopore long read data☆18Updated last month
- ☆21Updated last year
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆18Updated 6 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆30Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 7 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆14Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆17Updated last year
- Benchmarking long-read RNA-seq analysis tools☆26Updated 2 months ago
- ☆21Updated last month
- ☆18Updated 2 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- ☆20Updated 4 years ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 5 years ago