EricSDavis / marinerLinks
Explore the Hi-Cs
☆11Updated 2 months ago
Alternatives and similar repositories for mariner
Users that are interested in mariner are comparing it to the libraries listed below
Sorting:
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Updated last year
- ☆18Updated last year
- A toolkit for analyzing architectural stripes☆20Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 11 months ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 6 years ago
- ☆19Updated 2 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 6 months ago
- ☆34Updated 2 months ago
- ☆23Updated 4 years ago
- scover☆24Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆42Updated 3 months ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last month
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- GENome Organisation Visual Analytics☆15Updated 4 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Updated 3 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Updated 4 years ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆18Updated last year
- ☆22Updated 2 years ago
- ☆37Updated 6 years ago