hewm2008 / VCF2DisLinks
VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
☆50Updated 3 months ago
Alternatives and similar repositories for VCF2Dis
Users that are interested in VCF2Dis are comparing it to the libraries listed below
Sorting:
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 11 months ago
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Updated 2 weeks ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- scripts☆20Updated 7 years ago
- ☆40Updated 4 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 6 months ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- DNA序列比对结果 可视化展示工具☆56Updated 2 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆19Updated 2 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆13Updated 2 years ago
- ☆41Updated 2 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆42Updated 2 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated 3 weeks ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- Genome Annotation Pipeline☆42Updated last year
- Hapmap-v1☆12Updated 5 years ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆24Updated last month
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- ☆42Updated last year
- Useful bioinformatic scripts☆58Updated last year
- Portable solution to generate genome alignment chains using lastz☆59Updated 2 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago