hewm2008 / VCF2Dis
VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
☆38Updated 2 weeks ago
Alternatives and similar repositories for VCF2Dis:
Users that are interested in VCF2Dis are comparing it to the libraries listed below
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- scripts used in Rice Pangenome Projects (Evolution).☆10Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- scripts☆16Updated 6 years ago
- ☆40Updated last year
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆17Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆43Updated last year
- ☆18Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 4 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆31Updated this week
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆26Updated 8 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆24Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆66Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆14Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆29Updated 3 months ago
- a Semi-automated pipeline for assembling T2T genome☆16Updated this week
- ☆29Updated 7 months ago
- ☆43Updated last year
- Genome Annotation Pipeline☆35Updated 8 months ago
- A machine learning-based genotyping tool for structural variation in short reads☆18Updated last week
- Dynamic Elongation of a Genome Assembly Path☆21Updated 11 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆27Updated last month