hewm2008 / VCF2DisLinks
VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
☆43Updated last week
Alternatives and similar repositories for VCF2Dis
Users that are interested in VCF2Dis are comparing it to the libraries listed below
Sorting:
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 11 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 8 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- scripts☆18Updated 6 years ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- a Semi-automated pipeline for assembling T2T genome☆20Updated this week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 2 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆40Updated 2 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆22Updated 4 months ago
- ☆37Updated last month
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- ☆42Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆40Updated this week
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆39Updated this week
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆37Updated 2 months ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆18Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago