hewm2008 / VCF2DisLinks
VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
☆42Updated 2 months ago
Alternatives and similar repositories for VCF2Dis
Users that are interested in VCF2Dis are comparing it to the libraries listed below
Sorting:
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 10 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆28Updated 6 months ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated last month
- ☆20Updated 2 years ago
- ☆34Updated 10 months ago
- a Semi-automated pipeline for assembling T2T genome☆19Updated 2 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Likelihood-based Selective Sweep Detection☆39Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- ☆40Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated 11 months ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆18Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago
- ☆43Updated last year
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- scripts☆17Updated 6 years ago
- ☆50Updated last month
- scripts used in Rice Pangenome Projects (Evolution).☆11Updated last year
- Scripts of population genomics analysis☆36Updated 7 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆21Updated 3 months ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆16Updated 2 weeks ago