An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
☆19Mar 6, 2024Updated 2 years ago
Alternatives and similar repositories for HFKReads
Users that are interested in HFKReads are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated 2 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆175Jun 9, 2026Updated 3 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆45Updated this week
- An ultra-fast gzip file tools☆28Jun 23, 2026Updated 3 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆60Jun 20, 2026Updated 3 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆18Sep 16, 2026Updated last week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆22Jul 26, 2023Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated 2 months ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆84Aug 1, 2026Updated last month
- ☆28Mar 23, 2024Updated 2 years ago
- ☆23Jan 13, 2026Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆42May 19, 2025Updated last year
- ☆17Nov 19, 2025Updated 10 months ago
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Jul 16, 2026Updated 2 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 5 months ago
- ☆43Oct 6, 2025Updated 11 months ago
- ☆29Jul 16, 2022Updated 4 years ago
- ☆26Aug 14, 2026Updated last month
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆35Aug 21, 2026Updated last month
- Centromics: visualing centromeres with multiple omics data☆27Mar 4, 2025Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 2 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆37Jul 5, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆43Jun 8, 2023Updated 3 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- A mosaic genome painting tool for plant genomes☆18May 6, 2026Updated 4 months ago
- Pooled Sequencing Analysis for Sex Signal☆15Sep 14, 2021Updated 5 years ago
- ☆28May 12, 2026Updated 4 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 6 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Dec 7, 2022Updated 3 years ago