Alternatives and similar repositories for VCF2PCACluster

Users that are interested in VCF2PCACluster are comparing it to the libraries listed below

• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆52Updated 2 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆93Updated 7 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆81Updated 4 years ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆98Updated 3 years ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆51Updated 5 years ago
• chenlianfu / geta
  ☆80Updated last year
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆68Updated last year
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆52Updated 3 months ago
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆59Updated last year
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆97Updated 2 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆45Updated 3 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 2 months ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆102Updated 2 weeks ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆119Updated last month
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆93Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆90Updated last month
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆42Updated 6 years ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆62Updated 7 months ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆36Updated 4 years ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆63Updated 6 months ago
• LKremer / CAFE_fig
  A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
  ☆62Updated 5 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆78Updated last year
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆100Updated this week
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• vlothec / TRASH
  RepeatIdentifier
  ☆66Updated 3 months ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆98Updated 5 months ago
• liangclab / HERA
  ☆77Updated 5 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• zhangrengang / SubPhaser
  To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.
  ☆62Updated 3 months ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated last year