A new simple and efficient software to PCA and Cluster For popolation VCF File
☆84Aug 1, 2026Updated 2 months ago
Alternatives and similar repositories for VCF2PCACluster
Users that are interested in VCF2PCACluster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆61Jun 20, 2026Updated 4 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Jul 16, 2026Updated 3 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Oct 9, 2026Updated 3 weeks ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆39Jul 5, 2025Updated last year
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆174Jun 9, 2026Updated 4 months ago
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 4 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆112Jun 20, 2026Updated 4 months ago
- Any Way to Show Multi genomic Synteny☆232Oct 14, 2026Updated 2 weeks ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆49Mar 7, 2024Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆211Jul 16, 2026Updated 3 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆231Jul 5, 2025Updated last year
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆26Mar 27, 2026Updated 7 months ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- ☆23Oct 30, 2022Updated 4 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Multi-genome synteny block visualization tool☆67Oct 13, 2026Updated 2 weeks ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- 整理常用的群体遗传学分析流程和脚本☆122Jan 16, 2026Updated 9 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- accurate LiftOver tool for new genome assemblies☆155Aug 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A fast, robust and accurate variant calling software for human germline DNA analysis☆15Jun 30, 2026Updated 4 months ago
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆35Jul 13, 2026Updated 3 months ago
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Using Deep Learning to predict gene annotations☆313Oct 23, 2026Updated last week
- tomato graph pangenome☆95Dec 13, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R-package: Calculation of haplotype blocks and libraries☆36Jul 22, 2025Updated last year
- Scripting analyses of genomes in Ensembl Plants☆45Apr 22, 2026Updated 6 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated 3 weeks ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- ☆36Aug 18, 2024Updated 2 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆345Jul 7, 2023Updated 3 years ago