HuiyangYu / TGSFilterLinks
TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
☆25Updated last year
Alternatives and similar repositories for TGSFilter
Users that are interested in TGSFilter are comparing it to the libraries listed below
Sorting:
- ☆17Updated 10 months ago
- Domain based annotation of transposable elements☆20Updated 2 weeks ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 10 months ago
- SINE annotation tool for plant genomes☆18Updated last year
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- ☆28Updated last year
- ☆28Updated 6 months ago
- ☆28Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 4 months ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 6 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆29Updated 4 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 4 months ago
- Consensus genome annotation using OMA☆27Updated 4 months ago
- plot genome alignment synteny☆21Updated 5 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- TD2☆22Updated 4 months ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- Phasing reads with secondary alignments☆21Updated 10 months ago
- A tool for recovering synteny blocks from multiple alignment☆31Updated 4 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated last month
- Yet another Hi-C scaffolding tool☆22Updated last year