HuiyangYu / TGSFilterLinks
TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
☆25Updated last year
Alternatives and similar repositories for TGSFilter
Users that are interested in TGSFilter are comparing it to the libraries listed below
Sorting:
- ☆16Updated 11 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆29Updated 3 weeks ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 7 months ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆23Updated last week
- ☆28Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 5 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- ☆28Updated 3 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 months ago
- Consensus genome annotation using OMA☆27Updated 5 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 2 months ago
- ☆30Updated 8 months ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- TD2☆25Updated this week
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated this week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- a fork of the gap-closing pipeline PBJelly☆15Updated 6 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆30Updated 5 months ago