hewm2008 / RectChr
Multi-level visualization of genomic statistical variables on rectangular chromosomes
☆34Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for RectChr
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆13Updated 2 years ago
- Resistify is a command line program that identifies and classifies NLRs from protein sequences☆26Updated this week
- High-precision TE Annotator☆58Updated this week
- An efficient assembly tool for plant mitochondrial genome☆28Updated 5 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆29Updated 2 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆21Updated 2 months ago
- ☆28Updated 2 months ago
- ☆20Updated 3 months ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆24Updated 3 weeks ago
- A novel genome assembly pipeline based on deep learning☆51Updated last month
- ☆28Updated 2 years ago
- ☆21Updated 2 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆63Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated last month
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆37Updated 3 years ago
- ☆36Updated last year
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- HiCAT new project☆27Updated 11 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- paml documentation and tutorials☆45Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆22Updated last week
- A tool for plotting CAFE5 gene family expansion/contraction result☆26Updated last year
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆40Updated 9 months ago
- A genome assembly assessment pipeline.☆36Updated 11 months ago
- A tool for performing collinearity-incorporating homology inference☆27Updated last year
- Genome Annotation Pipeline☆32Updated 2 months ago
- ☆21Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year