Alternatives and similar repositories for RectChr

Users that are interested in RectChr are comparing it to the libraries listed below

• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated 2 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆52Updated 8 months ago
• simon19891216 / CentIER
  ☆43Updated 6 months ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆68Updated last year
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆53Updated 5 months ago
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆65Updated last year
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆51Updated last month
• wangyibin / CPhasing
  C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
  ☆83Updated this week
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆44Updated 4 months ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆29Updated 2 years ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆35Updated last month
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆25Updated 3 months ago
• hewm2008 / Reseqtools
  A Toolkit for analyzing next-generation DNA Re-Sequencing data
  ☆14Updated 3 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆38Updated 2 years ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆40Updated this week
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆57Updated 3 years ago
• NotebookOFXiaoMing / SuperPangenomeofGrapevines
  ☆21Updated last year
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆42Updated 2 years ago
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆69Updated last year
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆21Updated 2 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆37Updated last year
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆40Updated 7 years ago
• Dee-chen / Tree2gd
  ☆45Updated 3 years ago
• simon19891216 / GFAP
  a software for annotating plant genes
  ☆23Updated 2 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆45Updated last year
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆51Updated 2 years ago
• baozg / Potato_C88
  Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
  ☆28Updated last year
• Sh1ne111 / KMERIA
  A KMER-based genome-wIde Assocation testing approach on polyploids
  ☆41Updated 3 weeks ago