Alternatives and similar repositories for scNET

Users that are interested in scNET are comparing it to the libraries listed below

• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆74Updated 4 months ago
• snehamitra / SCARlink
  ☆51Updated 8 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 3 weeks ago
• lanagarmire / Asgard
  ☆42Updated last year
• SchubertLab / mvTCR
  ☆51Updated 6 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆69Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆41Updated last week
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆23Updated last month
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆58Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated last year
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆68Updated last month
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆104Updated last month
• xiaoyeye / TFvelo
  ☆43Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆40Updated 4 months ago
• WanluLiuLab / scAtlasVAE
  ☆35Updated 2 months ago
• YosefLab / popV
  ☆75Updated last week
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated last year
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆48Updated this week
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆43Updated 10 months ago
• Durenlab / LINGER
  ☆103Updated last week
• di-0579 / Spatial_epigenome-transcriptome_co-sequencing
  ☆28Updated 2 years ago
• buenrostrolab / scPrinter
  ☆38Updated 3 weeks ago
• Lan-lab / sc-GC
  ☆30Updated 2 years ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆21Updated 3 weeks ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆26Updated this week
• yjgeno / GenKI
  ☆15Updated last year