madilabcode / scNETLinks
☆50Updated last month
Alternatives and similar repositories for scNET
Users that are interested in scNET are comparing it to the libraries listed below
Sorting:
- ☆43Updated last year
- ☆45Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- ☆29Updated 3 weeks ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆103Updated 5 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆25Updated 2 months ago
- ☆113Updated 2 months ago
- ☆54Updated 9 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆37Updated 2 weeks ago
- Single cell omics biology annotations☆51Updated 4 months ago
- R implementation of GeneTrajectory☆63Updated last year
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- A tool for semi-automatic cell type harmonization and integration☆109Updated 5 months ago
- ☆56Updated 2 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆52Updated last year
- ☆82Updated last week
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆67Updated last month
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆28Updated 2 months ago
- inferring regulatory cellular dynamics☆52Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated 11 months ago
- ☆31Updated 2 years ago
- ☆37Updated 2 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆73Updated 3 weeks ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆25Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month