Alternatives and similar repositories for dynbenchmark:

Users that are interested in dynbenchmark are comparing it to the libraries listed below

• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆162Updated last year
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆137Updated last year
• czbiohub-sf / tabula-muris
  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
  ☆190Updated 2 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆155Updated 2 years ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• YosefLab / VISION
  Signature Analysis and Visualization for Single-Cell RNA-seq
  ☆165Updated 10 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆158Updated 3 weeks ago
• brianhie / scanorama
  Panoramic stitching of single cell data
  ☆277Updated last year
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆226Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆162Updated last year
• swolock / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆146Updated 4 years ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆269Updated last week
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆221Updated 4 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆140Updated 4 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 10 months ago
• dynverse / dynmethods
  A collection of 50+ trajectory inference methods within a common interface 📥📤
  ☆127Updated last year
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆256Updated last year
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆197Updated last year
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆138Updated 3 years ago
• farrellja / URD
  URD - Reconstruction of Branching Developmental Trajectories
  ☆124Updated 3 years ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆288Updated last year
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆228Updated last year
• sunduanchen / Scissor
  Scissor package
  ☆214Updated 11 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆171Updated this week
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆238Updated last year
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆226Updated this week
• neurorestore / Libra
  ☆165Updated 7 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆178Updated 5 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆187Updated last month
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆143Updated 3 months ago