Comparison of methods for trajectory inference on single-cell data ๐ฅ
โ223Aug 30, 2023Updated 3 years ago
Alternatives and similar repositories for dynbenchmark
Users that are interested in dynbenchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of 50+ trajectory inference methods within a common interface ๐ฅ๐คโ131Dec 21, 2023Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages ๐ฆโ187Jun 24, 2021Updated 5 years ago
- Selecting the optimal trajectory inference based on a given dataset and user input ๐ฎโ19Jun 29, 2020Updated 6 years ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq dataโ445Sep 11, 2026Updated last week
- A portable and fast single cell type identifierโ64May 12, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer โข AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This contains the dataset for comparing scRNA-seq analysis methodsโ92Aug 26, 2020Updated 6 years ago
- Bench-marking classification tools for scRNA-seq dataโ196Jun 9, 2022Updated 4 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversiโฆโ10Apr 16, 2020Updated 6 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.โ3,857Sep 7, 2026Updated last week
- Interpretation of cell states using reference single-cell mapsโ324Dec 19, 2025Updated 9 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphsโ448Aug 25, 2026Updated 3 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics dataโ1,695Updated this week
- Mapping out the coarse-grained connectivity structures of complex manifolds.โ244May 23, 2020Updated 6 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.โ155Jan 20, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean โข AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.โ349Apr 23, 2024Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipelineโ312Mar 6, 2023Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmonyโ672Jun 5, 2026Updated 3 months ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methodsโ48May 23, 2020Updated 6 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expressionโ32Dec 3, 2024Updated last year
- โ122Aug 17, 2018Updated 8 years ago
- A toolkit for single-cell immune profilingโ376Aug 14, 2026Updated last month
- โ16Sep 1, 2023Updated 3 years ago
- Benchmarking analysis of data integration toolsโ431Apr 27, 2026Updated 4 months ago
- Open source password manager - Proton Pass โข AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- โ19Mar 31, 2023Updated 3 years ago
- โ15Feb 28, 2022Updated 4 years ago
- Table of software for the analysis of single-cell RNA-seq data.โ344Updated this week
- Tools and methods for analysis of single cell assay data in Rโ264Oct 17, 2025Updated 11 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.โ46Jul 23, 2021Updated 5 years ago
- Community-provided extensions to Seuratโ372Jun 29, 2026Updated 2 months ago
- SingleCellNet: classify single cells across species and platformsโ141Aug 21, 2023Updated 3 years ago
- Simple simulation of single-cell RNA sequencing dataโ234May 20, 2026Updated 4 months ago
- Scripts to reproduce analyses of tradeSeq paper.โ16Feb 5, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean โข AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omicsโ125Sep 29, 2025Updated 11 months ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq dataโ30Mar 2, 2020Updated 6 years ago
- A package to help convert different single-cell data formats to each otherโ470Feb 20, 2026Updated 7 months ago
- Panoramic stitching of single cell dataโ295Jul 14, 2025Updated last year
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq anโฆโ1,593Dec 11, 2022Updated 3 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)โ347Jul 28, 2020Updated 6 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seqโ185Jun 10, 2024Updated 2 years ago