R and MATLAB scripts for MAGICAL
☆12Jun 26, 2024Updated 2 years ago
Alternatives and similar repositories for magical
Users that are interested in magical are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 5 months ago
- single-cell decorrelated module networks☆34Aug 24, 2024Updated 2 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- Universal Single-Cell Genomics Preprocessing package☆53Sep 15, 2026Updated last week
- ☆11Jun 13, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Sep 1, 2023Updated 3 years ago
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆34Mar 14, 2025Updated last year
- Functional Inference of Gene Regulation☆55Jul 5, 2024Updated 2 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- a modified version of FunSeq2 using new data context☆15Aug 18, 2022Updated 4 years ago
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated 3 weeks ago
- ☆69Apr 22, 2026Updated 5 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated last year
- Code used for muti cellular factor analysis☆20Dec 13, 2023Updated 2 years ago
- ☆17Nov 13, 2021Updated 4 years ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 6, 2026Updated 2 months ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated 8 months ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Aug 27, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Finding gene expression states in scRNA-seq data☆58Mar 22, 2024Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 7 months ago
- Recurrent Variational Auto gene encoder☆19Jan 12, 2023Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆62Nov 18, 2022Updated 3 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆264Jan 16, 2026Updated 8 months ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Sep 17, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- cell type specific, trait-associated gene regulation☆31Sep 8, 2026Updated 2 weeks ago
- ☆64Aug 26, 2025Updated last year
- ☆137Jul 11, 2026Updated 2 months ago