Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
☆186Jun 24, 2021Updated 4 years ago
Alternatives and similar repositories for dyno
Users that are interested in dyno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆131Dec 21, 2023Updated 2 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆655Jun 1, 2026Updated last week
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆338Apr 23, 2024Updated 2 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆183Dec 18, 2021Updated 4 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated 3 weeks ago
- A package to help convert different single-cell data formats to each other☆468Feb 20, 2026Updated 3 months ago
- CellRank: dynamics from multi-view single-cell data☆451Updated this week
- RNA velocity estimation in Python☆176Oct 7, 2025Updated 8 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- RNA velocity estimation in R☆197Sep 14, 2023Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆193Mar 9, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆329Nov 1, 2022Updated 3 years ago
- Metacell - Single-cell mRNA Analysis☆121Mar 16, 2026Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆430Feb 4, 2026Updated 4 months ago
- Community-provided extensions to Seurat☆365Feb 17, 2026Updated 3 months ago
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 7 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆142Dec 25, 2021Updated 4 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆382Oct 3, 2024Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆232Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆674Nov 14, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methods for detecting doublets in single-cell sequencing data☆252Jun 1, 2026Updated last week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆656Updated this week
- ☆364Dec 9, 2021Updated 4 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆310Mar 6, 2023Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Fast Wilcoxon and auROC☆212May 5, 2026Updated last month
- Simplify functional enrichment results☆126Jan 30, 2026Updated 4 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Assessing the purity of single cell population☆150Jun 3, 2022Updated 4 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆243May 23, 2020Updated 6 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆486Apr 5, 2024Updated 2 years ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 5 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆338Jul 28, 2020Updated 5 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆255Updated this week