Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
☆185Jun 24, 2021Updated 4 years ago
Alternatives and similar repositories for dyno
Users that are interested in dyno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆133Dec 21, 2023Updated 2 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆538Mar 21, 2025Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆636Nov 12, 2025Updated 4 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆327Apr 23, 2024Updated last year
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆180Dec 18, 2021Updated 4 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆424Sep 4, 2025Updated 7 months ago
- A package to help convert different single-cell data formats to each other☆462Feb 20, 2026Updated last month
- RNA velocity estimation in Python☆174Oct 7, 2025Updated 6 months ago
- CellRank: dynamics from multi-view single-cell data☆437Updated this week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆776Jan 6, 2024Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- RNA velocity estimation in R☆196Sep 14, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆319Nov 1, 2022Updated 3 years ago
- Metacell - Single-cell mRNA Analysis☆120Mar 16, 2026Updated 3 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- Community-provided extensions to Seurat☆359Feb 17, 2026Updated last month
- Tools and methods for analysis of single cell assay data in R☆262Oct 17, 2025Updated 5 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆141Dec 25, 2021Updated 4 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆379Oct 3, 2024Updated last year
- Inferring CNV from Single-Cell RNA-Seq☆662Nov 14, 2025Updated 4 months ago
- Methods for detecting doublets in single-cell sequencing data☆241Feb 12, 2026Updated last month
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Multi-sample multi-group scRNA-seq analysis tools☆223Mar 25, 2026Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆631Mar 23, 2026Updated 2 weeks ago
- ☆361Dec 9, 2021Updated 4 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆239May 8, 2023Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆307Mar 6, 2023Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Fast Wilcoxon and auROC☆207Nov 8, 2024Updated last year
- Simplify functional enrichment results☆124Jan 30, 2026Updated 2 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆176Jun 10, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Assessing the purity of single cell population☆144Jun 3, 2022Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆238May 23, 2020Updated 5 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆481Apr 5, 2024Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆248Apr 1, 2026Updated last week
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 5 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆334Jul 28, 2020Updated 5 years ago