Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
☆187Jun 24, 2021Updated 5 years ago
Alternatives and similar repositories for dyno
Users that are interested in dyno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆131Dec 21, 2023Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- NicheNet: predict active ligand-target links between interacting cells☆683Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Comparison of methods for trajectory inference on single-cell data 🥇☆223Aug 30, 2023Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆347Nov 1, 2022Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 8 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆248Jul 6, 2026Updated 3 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆185Dec 18, 2021Updated 4 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Oct 15, 2026Updated 2 weeks ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆319Jun 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- AUCell: score single cells with gene regulatory networks☆207Mar 9, 2024Updated 2 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆387Oct 3, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- Fast Wilcoxon and auROC☆220Sep 20, 2026Updated last month
- RNA velocity estimation in R☆196Sep 14, 2023Updated 3 years ago
- Metacell - Single-cell mRNA Analysis☆124Aug 25, 2026Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- RNA velocity estimation in Python☆177Oct 7, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77May 20, 2021Updated 5 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆217Jan 9, 2023Updated 3 years ago
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- Signature Analysis and Visualization for Single-Cell RNA-seq☆186Jun 10, 2024Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆314Jun 30, 2026Updated 3 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆142Dec 25, 2021Updated 4 years ago
- Community-provided extensions to Seurat☆372Oct 8, 2026Updated 3 weeks ago
- Interactively analyze single cell genomic data☆190Oct 9, 2026Updated 2 weeks ago
- Detect doublets in single-cell RNA-seq data☆85Jul 3, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools and methods for analysis of single cell assay data in R☆266Oct 17, 2025Updated last year
- Methods for detecting doublets in single-cell sequencing data☆276Oct 18, 2026Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆427Sep 12, 2026Updated last month
- ☆363Dec 9, 2021Updated 4 years ago
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆555Aug 3, 2026Updated 2 months ago
- URD - Reconstruction of Branching Developmental Trajectories☆129Jun 29, 2021Updated 5 years ago