Alternatives and similar repositories for dyno

Users that are interested in dyno are comparing it to the libraries listed below

• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆183Updated last year
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆99Updated 4 years ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆204Updated last year
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆194Updated 2 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆199Updated last month
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆217Updated last month
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆144Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆216Updated last month
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆111Updated 5 years ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆185Updated last year
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆209Updated last month
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆51Updated 3 years ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆110Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆180Updated 3 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 3 weeks ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆136Updated last year
• cole-trapnell-lab / garnett
  Automated cell type classification
  ☆116Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆187Updated 3 weeks ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆60Updated 2 months ago
• farrellja / URD
  URD - Reconstruction of Branching Developmental Trajectories
  ☆126Updated 4 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆96Updated 5 years ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆107Updated 2 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆123Updated last year
• dynverse / dynmethods
  A collection of 50+ trajectory inference methods within a common interface 📥📤
  ☆132Updated 2 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆114Updated 3 years ago
• rpolicastro / scProportionTest
  ☆75Updated 2 years ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆121Updated 2 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆76Updated 2 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆231Updated last month