tanlabcode / CytoTalkLinks
A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
☆43Updated 3 weeks ago
Alternatives and similar repositories for CytoTalk
Users that are interested in CytoTalk are comparing it to the libraries listed below
Sorting:
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆56Updated 3 weeks ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 5 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆64Updated last week
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Identifying external communication signals using single-cell transcriptomics data☆20Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- cTPnet Package☆25Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- ☆58Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆77Updated 4 months ago
- ☆45Updated 3 months ago
- ☆31Updated 6 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago