tanlabcode / CytoTalk
A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
☆39Updated 6 months ago
Alternatives and similar repositories for CytoTalk:
Users that are interested in CytoTalk are comparing it to the libraries listed below
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 2 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- ☆40Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 10 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- ☆38Updated 3 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 11 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆57Updated 11 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- Single cell omics biology annotations☆50Updated last week
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- ☆50Updated 7 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆59Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- SPATA Package for spatial gene expression analysis☆22Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆57Updated 2 years ago
- Gene group activity utility functions for Scanpy☆71Updated 2 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆69Updated 2 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago