A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
☆44Oct 10, 2025Updated 6 months ago
Alternatives and similar repositories for CytoTalk
Users that are interested in CytoTalk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational method for inferring cell-cell communication signaling networks using single-cell transcriptomics data.☆21Dec 29, 2025Updated 4 months ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆30Aug 16, 2021Updated 4 years ago
- ☆28Sep 29, 2025Updated 7 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- ☆23Jul 9, 2025Updated 9 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆87Aug 10, 2025Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆31Jul 16, 2025Updated 9 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jun 19, 2025Updated 10 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆31Dec 3, 2024Updated last year
- ☆63Aug 26, 2025Updated 8 months ago
- Implementation of MaSigPro for scRNA-Seq Data☆19Jul 31, 2024Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆639Nov 12, 2025Updated 5 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 weeks ago
- ☆14Jan 16, 2019Updated 7 years ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆428Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆31Apr 9, 2022Updated 4 years ago
- ☆16Jul 9, 2024Updated last year
- ☆50Jan 16, 2020Updated 6 years ago
- ☆24Aug 20, 2024Updated last year
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆44Apr 1, 2026Updated 3 weeks ago
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆20Jan 28, 2025Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆24Aug 28, 2025Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 14, 2026Updated 2 weeks ago
- ☆15Feb 28, 2022Updated 4 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- An R package for the analysis and interpretation of cell migration tracks.☆14Sep 19, 2025Updated 7 months ago
- R package to access DoRothEA's regulons☆155Feb 24, 2024Updated 2 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆469Jun 6, 2025Updated 10 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago