A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
☆45Oct 10, 2025Updated 11 months ago
Alternatives and similar repositories for CytoTalk
Users that are interested in CytoTalk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational method for inferring cell-cell communication signaling networks using single-cell transcriptomics data.☆21Dec 29, 2025Updated 8 months ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆249Aug 7, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆25Jul 9, 2025Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆33Jul 16, 2025Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆196Aug 12, 2025Updated last year
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Estimation of Single-Cell Potency with Single Cell Entropy☆47Apr 12, 2023Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- ☆64Aug 26, 2025Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆678Jun 1, 2026Updated 3 months ago
- ☆33Jul 7, 2026Updated 2 months ago
- ☆32Apr 9, 2022Updated 4 years ago
- ☆14Jan 16, 2019Updated 7 years ago
- ☆17Jun 17, 2021Updated 5 years ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆448Aug 25, 2026Updated 3 weeks ago
- An R package for the analysis and interpretation of cell migration tracks.☆15Sep 19, 2025Updated last year
- ☆52Jan 16, 2020Updated 6 years ago
- ☆24Aug 20, 2024Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆131Aug 3, 2026Updated last month
- ☆16Jul 9, 2024Updated 2 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated last month
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 5 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- R package to access DoRothEA's regulons☆162Feb 24, 2024Updated 2 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆486Jun 6, 2025Updated last year
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆21Jan 28, 2025Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆89Oct 6, 2023Updated 2 years ago