ratschlab / scimLinks
Code for Universal Single-Cell Matching with Unpaired Feature Sets
☆21Updated 4 years ago
Alternatives and similar repositories for scim
Users that are interested in scim are comparing it to the libraries listed below
Sorting:
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- CAST package☆40Updated 7 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- Multi-resolution Variational Inference☆22Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- ☆35Updated 3 months ago
- ☆11Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- .h5mu files interface for Seurat☆32Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 2 weeks ago
- ☆25Updated 3 months ago
- ☆18Updated 10 months ago
- ☆52Updated 2 years ago
- ☆26Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆21Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 6 months ago
- ☆22Updated 2 years ago