Codes used in LISTA project.
☆14Apr 17, 2024Updated 2 years ago
Alternatives and similar repositories for LISTA
Users that are interested in LISTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Dec 18, 2023Updated 2 years ago
- LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states☆18Oct 10, 2026Updated last week
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆17Nov 25, 2025Updated 10 months ago
- Deposited codes for snMultiome in human cortex manuscript☆14Aug 12, 2024Updated 2 years ago
- CellRank 2's reproducibility repository.☆18Sep 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- R code for metaanalysis of single cell liver data☆12Feb 1, 2021Updated 5 years ago
- scType rewritten in python☆26Nov 7, 2024Updated last year
- scripts associated with NAFLD-NASH project☆31May 23, 2024Updated 2 years ago
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆15Oct 23, 2024Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆35Jul 13, 2024Updated 2 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆24Jul 18, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆17Apr 15, 2025Updated last year
- Jupyter notebooks for analysis and figures related to the native organelle IP paper☆14Mar 10, 2026Updated 7 months ago
- ☆14Jun 11, 2023Updated 3 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- ☆167Mar 20, 2026Updated 6 months ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆20Dec 5, 2024Updated last year
- ☆12Dec 22, 2021Updated 4 years ago
- ☆200Sep 18, 2024Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆14Mar 11, 2024Updated 2 years ago
- ☆29Dec 25, 2023Updated 2 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆96Oct 9, 2024Updated 2 years ago
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆92Mar 19, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20Sep 29, 2021Updated 5 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆35Feb 24, 2023Updated 3 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- ☆13Mar 29, 2024Updated 2 years ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆16May 7, 2026Updated 5 months ago
- permANOVA toolbox - Provides add-on functions to perform cluster-based permutation statistics on factorial designs within the Fieldtrip t…☆13Oct 26, 2020Updated 5 years ago