haoshijie13 / LISTA
Codes used in LISTA project.
☆10Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for LISTA
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆17Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- Python implementation of Gene Trajectory☆20Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- ☆11Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- ☆30Updated 6 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- Whole mouse brain snATAC seq analysis☆23Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- ☆40Updated 6 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- ☆13Updated last year
- Functions for single cell data analysis☆27Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- ☆31Updated 8 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 6 months ago
- ☆10Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆9Updated last year
- Spatial transcriptomics of heart tissue☆17Updated 2 years ago
- AD regulome analysis☆11Updated last year
- ☆14Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago