Papatheodorou-Group / scOntoMatchView external linksLinks
scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies
☆10Oct 27, 2023Updated 2 years ago
Alternatives and similar repositories for scOntoMatch
Users that are interested in scOntoMatch are comparing it to the libraries listed below
Sorting:
- SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with a…☆14Nov 8, 2023Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Dec 3, 2024Updated last year
- Python module and utility programs for working with GFF files☆33Nov 25, 2020Updated 5 years ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆88Dec 26, 2025Updated last month
- Explore the Hi-Cs☆11Nov 30, 2025Updated 2 months ago
- A simple python package for doublet detection in scRNA-seq data☆11Mar 30, 2023Updated 2 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated last year
- Cell marker identification and evaluation pipeline in single cell transcriptomes.☆10Jan 9, 2025Updated last year
- The Bioconductor Build System☆12Feb 6, 2026Updated last week
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Apr 22, 2022Updated 3 years ago
- ☆11Sep 22, 2021Updated 4 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 3 years ago
- Use hodge decomposition for trajectory analysis☆23Nov 12, 2025Updated 3 months ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- interactive visualization of single-cell transcriptomes☆11Dec 23, 2023Updated 2 years ago
- ☆11Apr 11, 2023Updated 2 years ago
- Van Gogh-inspired colour palettes for R with accessibility, metadata, exports, and ggplot2 integration☆10Dec 11, 2025Updated 2 months ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆13Jul 29, 2025Updated 6 months ago
- ☆11Nov 12, 2025Updated 3 months ago
- ☆10Aug 21, 2025Updated 5 months ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆11Jan 25, 2026Updated 2 weeks ago
- A modular, containerized pipeline for PRO-seq data processing☆11Feb 4, 2026Updated last week
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated last month
- Scanning and visualization for variable gap motifs.☆18Aug 6, 2024Updated last year
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Dec 2, 2024Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- The official implementation for "SANGO".☆12Mar 17, 2024Updated last year
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Dec 10, 2025Updated 2 months ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 4 years ago
- Semantic prefix map registry☆13Oct 31, 2025Updated 3 months ago
- https://relab.xidian.edu.cn/AgeAnno/#/☆14Oct 22, 2022Updated 3 years ago
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆12Jul 23, 2025Updated 6 months ago
- Tool kit to accelerate exploratory data analysis and data cleaning☆11Mar 22, 2021Updated 4 years ago
- Divalent siRNA for prion disease☆17Jan 12, 2026Updated last month
- ☆12Aug 9, 2024Updated last year