scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies
☆11Oct 27, 2023Updated 2 years ago
Alternatives and similar repositories for scOntoMatch
Users that are interested in scOntoMatch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with a…☆15May 5, 2026Updated 3 months ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 5 months ago
- Python module and utility programs for working with GFF files☆33Nov 25, 2020Updated 5 years ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆11Apr 6, 2023Updated 3 years ago
- Explore the Hi-Cs☆12Jul 25, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Template for creating a BioCypher-driven knowledge graph☆13Jan 15, 2026Updated 6 months ago
- ☆11Sep 22, 2021Updated 4 years ago
- Van Gogh-inspired colour palettes for R with accessibility, metadata, exports, and ggplot2 integration☆12Dec 11, 2025Updated 8 months ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆98May 9, 2026Updated 3 months ago
- Semantic prefix map registry☆14Jul 2, 2026Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆14Jul 7, 2026Updated last month
- an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data☆12Feb 19, 2026Updated 5 months ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Jun 11, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Genomic sequence preprocessing toolkit☆14Jul 27, 2026Updated 2 weeks ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆13May 9, 2026Updated 3 months ago
- ☆15May 27, 2025Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 5 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆24Jul 28, 2022Updated 4 years ago
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Aug 8, 2026Updated last week
- Tool kit to accelerate exploratory data analysis and data cleaning☆11Mar 22, 2021Updated 5 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- The Bioconductor Build System☆13Jul 17, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 4 years ago
- Tools to provide a control plane for managing the lifecycle of Dask clusters.☆25Jan 25, 2024Updated 2 years ago
- Site for Genomic Data Science Class☆17Sep 7, 2015Updated 10 years ago
- ☆16Apr 25, 2019Updated 7 years ago
- The Software of UnionCom Algorithm☆26Jul 29, 2024Updated 2 years ago
- ☆12Jun 11, 2023Updated 3 years ago
- Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations☆24Dec 17, 2021Updated 4 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 8 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Mar 16, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆14Apr 2, 2026Updated 4 months ago
- ☆11Apr 11, 2023Updated 3 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆31Mar 11, 2023Updated 3 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Semantic Similarity in Bio-Ontologies☆18Jan 30, 2026Updated 6 months ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 7 months ago
- ☆13Feb 2, 2023Updated 3 years ago