phillipnicol / scGBMLinks
Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models
☆13Updated 4 months ago
Alternatives and similar repositories for scGBM
Users that are interested in scGBM are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Single-cell RNA Processing Software☆11Updated 6 months ago
- scover☆24Updated 2 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 4 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Updated last year
- ☆20Updated 5 months ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- Docker container for genomics analyses in R.☆26Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Single-cell Case Control Analysis☆52Updated last week
- Pairwise Hierarchical Model☆20Updated 3 years ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆25Updated 5 months ago
- Pan-transcriptomic phenotyping☆19Updated last month
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 2 months ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- ☆19Updated 4 years ago
- ☆25Updated 3 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated last year
- ☆18Updated 2 years ago