Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models
☆17Jul 29, 2025Updated last year
Alternatives and similar repositories for scGBM
Users that are interested in scGBM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for visualizing and analyzing a spatial model of intratumor heterogeneity☆10Apr 3, 2024Updated 2 years ago
- Identify spatially variable genes by projecting to morphologically relevant curves☆11Jul 12, 2026Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆44Nov 10, 2025Updated 11 months ago
- ☆32Oct 28, 2026Updated last week
- Repository for meK-Means Inference Method☆10Aug 7, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A package containing metrics for evaluating subpopulation identification in clusterings, embeddings, graphs and space.☆11Jan 23, 2026Updated 9 months ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 10 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- ☆24Aug 17, 2026Updated 2 months ago
- Complex Heatmaps Using Base Graphics☆17Updated this week
- Biwhitened PCA☆15Mar 18, 2026Updated 7 months ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆20Feb 23, 2026Updated 8 months ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 3 years ago
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 4 months ago
- ☆10Oct 16, 2025Updated last year
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- a rust library for high throughput binary encoding of genomic sequences☆12Oct 27, 2026Updated last week
- Simulating the expected output from a GWAS with a given causal model.☆12May 24, 2021Updated 5 years ago
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- ☆13Sep 30, 2023Updated 3 years ago
- Normalization for single cell RNA-seq data☆11Aug 25, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 🧹 Remove technical noise from single-cell RNA sequencing count data with expectation-maximization☆31Oct 30, 2026Updated last week
- ☆11Oct 9, 2019Updated 7 years ago
- ☆23Sep 8, 2023Updated 3 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- Visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour hete…☆11Sep 12, 2017Updated 9 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- A web app to compare single-cell annotations☆10Feb 17, 2025Updated last year
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 10 months ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- A quick, free tool for single-cell annotation using large language models☆13Updated this week
- A R package for multi-dimensional data visualization☆11Jul 15, 2025Updated last year
- Benchmarking pipeline for single-cell perturbation prediction tools☆38Jul 11, 2025Updated last year
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- ☆24Oct 15, 2018Updated 8 years ago
- Some scripts for T-LGLL single cell RNA-seq project☆11Nov 19, 2021Updated 4 years ago