Alternatives and similar repositories for scGBM

Users that are interested in scGBM are comparing it to the libraries listed below

• single-cell-genetics / limix_qtl
  ☆20Updated 10 months ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆22Updated 2 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• jacobhepkema / scover
  scover
  ☆23Updated last year
• Morriseylab / scExtras
  ☆13Updated 10 months ago
• federicogiorgi / corto
  corto (Correlation Tool): an R package to generate correlation-based DPI networks
  ☆20Updated 2 years ago
• rnabioco / scraps
  Single-cell RNA Processing Software
  ☆11Updated 7 months ago
• WT215 / bayNorm
  Normalization for single cell RNA-seq data
  ☆9Updated 2 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆25Updated last year
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated last year
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• Siliegia / SIGMA
  R package for SIGMA, a clusterability measure for scRNA-seq data
  ☆12Updated 3 years ago
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 6 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• ayshwaryas / ddqc_R
  ☆11Updated 2 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated 10 months ago
• semraulab / phiclust
  A clusterability measure for scRNA-seq data.
  ☆18Updated 3 years ago
• cozygene / TCA
  ☆18Updated 4 years ago
• tengfei-emory / scBatch
  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
  ☆17Updated 3 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆37Updated 3 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 5 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆31Updated last month
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 3 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• aslihankarabacak / FootprintPipeline
  Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets
  ☆12Updated 6 years ago