phillipnicol / scGBMLinks
Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models
☆13Updated last month
Alternatives and similar repositories for scGBM
Users that are interested in scGBM are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- Single-cell RNA Processing Software☆11Updated 3 months ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- scover☆23Updated last year
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- ☆20Updated last month
- Pan-transcriptomic phenotyping☆18Updated 3 weeks ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- ☆11Updated 2 years ago
- ☆12Updated 6 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆18Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆16Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 4 months ago
- Pairwise Hierarchical Model☆19Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago