☆32Apr 3, 2026Updated last month
Alternatives and similar repositories for SLIDE
Users that are interested in SLIDE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14May 13, 2026Updated last week
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 6 months ago
- ☆64Aug 26, 2025Updated 8 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Apr 29, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated 2 months ago
- ☆10Jun 5, 2021Updated 4 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 10 months ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 2 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 3 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 10 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated 2 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆31Dec 3, 2024Updated last year
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- ☆17Sep 13, 2024Updated last year
- Mosaic single cell data integration using non-overlapping features☆38Sep 20, 2022Updated 3 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆12Oct 11, 2022Updated 3 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single cell omics biology annotations☆57Feb 26, 2026Updated 2 months ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆195Jan 30, 2026Updated 3 months ago
- ☆11Aug 21, 2024Updated last year
- scover☆23Nov 3, 2023Updated 2 years ago
- ☆23Jan 4, 2024Updated 2 years ago
- ☆11May 5, 2023Updated 3 years ago
- ☆12Nov 19, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆277May 7, 2026Updated 2 weeks ago
- mosaicMPI: mosaic multi-resolution program integration☆12May 13, 2026Updated last week
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Higher Order SVD implementation in PyTorch☆13Nov 14, 2022Updated 3 years ago
- Fast algorithms for GLM-PCA.☆15Mar 12, 2025Updated last year