jishnu-lab / SLIDE

Related projects: ⓘ

• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆30Updated 6 months ago
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆31Updated 5 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆49Updated last month
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆36Updated 2 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆22Updated 7 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆36Updated this week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆45Updated this week
• ncborcherding / Ibex
  Using BCR and expression for sequence embedding
  ☆18Updated 3 weeks ago
• zhanglhbioinfor / DIRECT-NET
  ☆10Updated last year
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆19Updated 3 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆38Updated 6 months ago
• cellatlas / human
  ☆37Updated 3 weeks ago
• theislab / cross_system_integration
  ☆10Updated last week
• linnarsson-lab / cytograph2
  ☆14Updated last year
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆46Updated 2 months ago
• xyang2uchicago / BioTIP
  BioTIP: Biological Tipping-Point Identification and Characterization
  ☆18Updated 2 months ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆32Updated last year
• theislab / scTab
  ☆40Updated last week
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆39Updated this week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆56Updated 4 months ago
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆24Updated 5 months ago
• cellatlas / cellatlas
  ☆16Updated 2 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆30Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆44Updated 5 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last month
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated last year
• buenrostrolab / stimATAC_analyses_code
  All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
  ☆37Updated last year
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆35Updated last week
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆34Updated 2 years ago
• ETH-NEXUS / scAmpi_single_cell_RNA
  Code related to scRNA analysis using the scAmpi workflow
  ☆24Updated this week