alevax / pyviperLinks
Porting of Protein Activity and Pathway Inference to single cell and Python.
☆12Updated last month
Alternatives and similar repositories for pyviper
Users that are interested in pyviper are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- ☆32Updated 4 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- Single-cell Orientation Tracing☆21Updated 3 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- R package of CSOmap(developing☆14Updated 3 years ago
- ☆13Updated 10 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 4 months ago
- cell type specific, trait-associated gene regulation☆26Updated 2 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆10Updated 2 years ago
- ☆49Updated 10 months ago
- ☆34Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via …☆22Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆22Updated last month
- ☆18Updated 3 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago
- ☆41Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago