alevax / pyviperLinks
Porting of Protein Activity and Pathway Inference to single cell and Python.
☆12Updated last month
Alternatives and similar repositories for pyviper
Users that are interested in pyviper are comparing it to the libraries listed below
Sorting:
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- ☆32Updated 5 months ago
- ☆49Updated 10 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated this week
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- ☆34Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- A pipeline for scRNA-seq data analysis☆14Updated 3 months ago
- R package of CSOmap(developing☆14Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 9 months ago
- ☆13Updated 11 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆38Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- ☆23Updated 2 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆15Updated 2 years ago
- ☆10Updated 2 years ago
- ☆16Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- ☆41Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago