Porting of Protein Activity and Pathway Inference to single cell and Python.
☆17Jun 12, 2026Updated 4 months ago
Alternatives and similar repositories for pyviper
Users that are interested in pyviper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A modular tool for proportion analysis in single-cell sequencing data☆28Feb 26, 2026Updated 7 months ago
- ☆54Jan 16, 2020Updated 6 years ago
- ☆15Jan 24, 2024Updated 2 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Jun 6, 2024Updated 2 years ago
- ☆60Nov 1, 2024Updated last year
- Finding gene expression states in scRNA-seq data☆58Mar 22, 2024Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆90Sep 26, 2026Updated 2 weeks ago
- ☆11Mar 17, 2024Updated 2 years ago
- ☆35Jun 15, 2026Updated 3 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆45Jul 10, 2026Updated 3 months ago
- ☆22Jul 7, 2026Updated 3 months ago
- ☆22Feb 28, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Mar 10, 2026Updated 7 months ago
- ☆33May 4, 2025Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆131Oct 5, 2026Updated last week
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 11 months ago
- ☆26Apr 3, 2019Updated 7 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆127Aug 24, 2026Updated last month
- Scripts capable of re-creating figures from Van Valen Lab publications☆18May 9, 2022Updated 4 years ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Collection of scripts for analysis of pan fetal immune atlas☆32Aug 11, 2022Updated 4 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- Reasoning on the response of logical signaling networks with Answer Set Programming☆15Feb 10, 2026Updated 8 months ago
- Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).☆29Nov 22, 2023Updated 2 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆57Feb 16, 2026Updated 7 months ago
- ☆35Jul 20, 2026Updated 2 months ago
- ☆21Mar 4, 2024Updated 2 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆40Aug 10, 2023Updated 3 years ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆333Sep 19, 2026Updated 3 weeks ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆14Mar 11, 2024Updated 2 years ago
- ☆10Sep 2, 2024Updated 2 years ago
- Peak caller for CUT&TAG data☆31Aug 18, 2022Updated 4 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆86Jul 25, 2025Updated last year