Alternatives and similar repositories for pyviper

Users that are interested in pyviper are comparing it to the libraries listed below

• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 10 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 2 weeks ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• gxiaolab / scAllele
  ☆38Updated last year
• jeongdo801 / scNOVA
  scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
  ☆11Updated 2 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 8 months ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 4 months ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆32Updated last year
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆32Updated 9 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• wenweixiong / MARVEL
  ☆49Updated last year
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated this week
• lkmklsmn / MitoTrace
  ☆18Updated last year
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆23Updated last year
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year
• morris-lab / CellTagR
  This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
  ☆21Updated 2 years ago
• ScialdoneLab / CIARA
  CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…
  ☆15Updated 2 years ago
• dpeerlab / pdac-progression
  ☆10Updated 2 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 11 months ago
• JiekaiLab / SOT
  Single-cell Orientation Tracing
  ☆21Updated 3 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆24Updated 2 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆35Updated last year
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆24Updated 2 months ago