alevax / pyviperLinks
Porting of Protein Activity and Pathway Inference to single cell and Python.
☆12Updated 2 months ago
Alternatives and similar repositories for pyviper
Users that are interested in pyviper are comparing it to the libraries listed below
Sorting:
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆69Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- A pipeline for scRNA-seq data analysis☆14Updated 3 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆32Updated 5 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- Single-cell Case Control Analysis☆50Updated 8 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- ☆17Updated last year
- ☆10Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated 3 weeks ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆35Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 7 months ago
- ☆13Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Functional Inference of Gene Regulation☆45Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- ☆33Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago