Alternatives and similar repositories for CAME

Users that are interested in CAME are comparing it to the libraries listed below

• Durenlab / LINGER
  ☆124Updated last week
• QuKunLab / SPACEL
  ☆60Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆102Updated 2 weeks ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆72Updated 2 years ago
• TencentAILabHealthcare / spatialID
  ☆40Updated 3 years ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆62Updated 5 months ago
• LiQian-XC / sctour
  A deep learning architecture for robust inference and accurate prediction of cellular dynamics
  ☆76Updated 6 months ago
• navinlabcode / CellTrek
  ☆129Updated 3 years ago
• zcang / COMMOT
  ☆129Updated last year
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆118Updated 3 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆138Updated 11 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆68Updated last year
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆58Updated 8 months ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆50Updated 5 months ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆63Updated 3 weeks ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆29Updated last year
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆82Updated 9 months ago
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆90Updated last year
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆41Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆71Updated 3 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆100Updated last year
• xiaoyeye / TFvelo
  ☆47Updated last year
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆116Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆50Updated last year
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆15Updated 4 months ago
• dpeerlab / ENVI
  ☆52Updated 4 months ago
• madilabcode / scNET
  ☆59Updated 2 weeks ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆109Updated 8 months ago
• SydneyBioX / scJoint
  ☆62Updated 2 years ago
• Xinyiw28 / CrossChat
  Detect hierarchical structures in cell-cell communications
  ☆16Updated last year