A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬
☆40Jul 28, 2025Updated last year
Alternatives and similar repositories for GRouNdGAN
Users that are interested in GRouNdGAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 8 months ago
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- A fast and robust Bayesian nonparametric method for prediction of complex traits using GWAS summary statistics☆14May 24, 2025Updated last year
- ☆20May 12, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated 11 months ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- ☆11Jan 12, 2024Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Updated this week
- ☆15Aug 9, 2023Updated 3 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- ☆29Mar 21, 2026Updated 5 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆124Sep 29, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- model-based understanding of single-cell CRISPR screening☆29Dec 13, 2024Updated last year
- Models and datasets for perturbational single-cell omics☆182Aug 19, 2022Updated 4 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated last month
- ☆10Dec 11, 2024Updated last year
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 9 months ago
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆14May 12, 2026Updated 3 months ago
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆83May 8, 2024Updated 2 years ago
- ☆18Feb 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 10 months ago
- ☆22Sep 8, 2023Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 5 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- ☆17Sep 16, 2024Updated last year
- ☆21Jan 11, 2026Updated 7 months ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆30Nov 2, 2024Updated last year
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 3 months ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks☆88May 27, 2024Updated 2 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Sep 2, 2025Updated 11 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jul 30, 2026Updated last month
- This is the alpha version of the CellOracle package☆487Apr 30, 2026Updated 4 months ago
- ☆31Mar 18, 2022Updated 4 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆181Oct 31, 2024Updated last year
- ☆29Oct 4, 2022Updated 3 years ago