Emad-COMBINE-lab / GRouNdGANLinks
A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network π§¬
β36Updated 5 months ago
Alternatives and similar repositories for GRouNdGAN
Users that are interested in GRouNdGAN are comparing it to the libraries listed below
Sorting:
- Multi-omic velocity inferenceβ113Updated last year
- Python implementation of the Slingshot pseudotime algorithmβ69Updated 2 months ago
- Non-parametric density inference for single-cell analysis.β74Updated 7 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omicsβ111Updated 3 months ago
- Cell cycle inference in single-cell RNA-seqβ51Updated 2 years ago
- Single cell omics biology annotationsβ51Updated 8 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysisβ126Updated last month
- β46Updated last year
- β49Updated 9 months ago
- Predict RNA velocity through deep learningβ71Updated 2 years ago
- spatial transcriptome, single cellβ73Updated 2 years ago
- β121Updated 7 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.β51Updated 11 months ago
- End-to-end analysis of spatial multi-omics dataβ101Updated last month
- R implementation of GeneTrajectoryβ68Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.β146Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map thβ¦β116Updated last year
- β56Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metricsβ79Updated last week
- Python client for the OmniPath web serviceβ55Updated 6 months ago
- Additional code and analysis from the single-cell integration benchmarking projectβ71Updated 3 years ago
- ACTIONet single-cell analysis frameworkβ44Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omicsβ57Updated this week
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inferenceβ27Updated last year
- Python implementation of Milo for differential abundance testing on KNN graphβ77Updated 10 months ago
- β59Updated last week
- β46Updated last year
- β30Updated 5 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omicsβ58Updated 6 months ago
- β88Updated last year