Winnie09 / Lamian
☆50Updated 7 months ago
Alternatives and similar repositories for Lamian:
Users that are interested in Lamian are comparing it to the libraries listed below
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- ☆39Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆28Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆72Updated 10 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆38Updated 2 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆33Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 2 weeks ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆17Updated last year
- R package for specialised analysis of single cell data☆37Updated 2 years ago
- scWGCNA☆58Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 6 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- ☆29Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆38Updated 4 years ago
- ☆47Updated last year
- ☆30Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago