Differential abundance (DA) and correlation analyses for microbial absolute abundance data
☆144Sep 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for ANCOMBC
Users that are interested in ANCOMBC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆35Oct 19, 2020Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 6 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆87Sep 15, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An R package for downstream data analysis of microbiome omics data☆292Sep 30, 2026Updated last week
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆153Feb 5, 2026Updated 8 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆51Jun 6, 2026Updated 4 months ago
- Orchestrating Microbiome Analysis☆112Sep 28, 2026Updated last week
- Network construction, analysis, and comparison for microbial compositional data☆180Jul 7, 2026Updated 3 months ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆93Jul 13, 2026Updated 2 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 10 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆206Aug 11, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- Species richness with high diversity☆69Jun 25, 2026Updated 3 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated last month
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Jul 28, 2026Updated 2 months ago
- Modeling strain-level variation by gene, phylogeny, or pathway☆14Aug 6, 2026Updated 2 months ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 4 years ago
- Microbiome analysis☆58Updated this week
- Code, unit tests, and tutorials for running PICRUSt2☆396Sep 25, 2026Updated 2 weeks ago
- microbiome R package☆319Sep 8, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆28Feb 27, 2024Updated 2 years ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆74Jun 6, 2024Updated 2 years ago
- Bioinformatics program inStrain☆192Updated this week
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 9 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 10 months ago
- diversity estimation under ecological networks☆83Jun 16, 2026Updated 3 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- CAMISIM: Simulating metagenomes and microbial communities☆233Jul 16, 2026Updated 2 months ago
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆253Sep 24, 2026Updated 2 weeks ago
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆425Sep 10, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- (Meta-)genome screening for functional and natural product gene sequences☆119Sep 21, 2026Updated 2 weeks ago