FrederickHuangLin / ANCOMBC
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
☆120Updated this week
Alternatives and similar repositories for ANCOMBC:
Users that are interested in ANCOMBC are comparing it to the libraries listed below
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆114Updated 2 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 2 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆113Updated last year
- R implementation of the LEfSe method☆56Updated last month
- Visualize microbiome data with black magic ggtree☆67Updated 4 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 6 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- diversity estimation under ecological networks☆83Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆153Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆125Updated last month
- Network construction, analysis, and comparison for microbial compositional data☆163Updated this week
- R package for microbiome biomarker discovery☆177Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 3 months ago
- ☆55Updated last year
- An R package for microbial community analysis in an environmental context☆66Updated 4 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆90Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆73Updated last week
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆135Updated 4 months ago
- functions to analyse sanger sequencing reads in R☆100Updated 2 weeks ago
- ☆71Updated last year
- Transform files to the microtable object with microeco package☆25Updated 3 months ago
- Import qiime2 artifacts to R☆167Updated 3 months ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 weeks ago
- Microbiome analysis☆52Updated this week
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Microbial ecological network visualization clustering☆103Updated this week
- Tools for visualising microbial community amplicon data☆67Updated 10 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆29Updated 8 months ago