Alternatives and similar repositories for ANCOMBC

Users that are interested in ANCOMBC are comparing it to the libraries listed below

• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆123Updated 4 months ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆172Updated last week
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆61Updated 3 years ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆117Updated 2 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆63Updated last month
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆192Updated 10 months ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 5 years ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 5 months ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆167Updated 3 months ago
• microbiome / mia
  Microbiome analysis
  ☆53Updated 2 weeks ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆173Updated last year
• microbiome / OMA
  Orchestrating Microbiome Analysis
  ☆105Updated 3 weeks ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated 5 months ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 5 years ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆52Updated 3 years ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated last month
• danknights / sourcetracker
  ☆79Updated 2 years ago
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆31Updated 5 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated 2 years ago
• knightlab-analyses / reference-frames
  ☆20Updated 5 years ago
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆28Updated last month
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 3 years ago
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆15Updated 3 years ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆58Updated last year
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated 10 months ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆151Updated last week
• caporaso-lab / sourcetracker2
  SourceTracker2
  ☆82Updated last year
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 4 months ago
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆32Updated 8 years ago