Differential abundance (DA) and correlation analyses for microbial absolute abundance data
☆143Apr 27, 2026Updated 4 months ago
Alternatives and similar repositories for ANCOMBC
Users that are interested in ANCOMBC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆36Oct 19, 2020Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆32Mar 27, 2026Updated 5 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated 11 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆86Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package for downstream data analysis of microbiome omics data☆291Jul 28, 2026Updated last month
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 6 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆52Jun 6, 2026Updated 2 months ago
- Orchestrating Microbiome Analysis☆110Aug 8, 2026Updated 3 weeks ago
- Network construction, analysis, and comparison for microbial compositional data☆182Jul 7, 2026Updated last month
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆89Jul 13, 2026Updated last month
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 9 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆202Aug 11, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- Species richness with high diversity☆68Jun 25, 2026Updated 2 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆235Aug 12, 2026Updated 2 weeks ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆129Jul 28, 2026Updated last month
- Modeling strain-level variation by gene, phylogeny, or pathway☆13Aug 6, 2026Updated 3 weeks ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 4 years ago
- Microbiome analysis☆58Aug 4, 2026Updated 3 weeks ago
- Code, unit tests, and tutorials for running PICRUSt2☆397Nov 27, 2025Updated 9 months ago
- microbiome R package☆318May 12, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bioinformatics program inStrain☆192Mar 12, 2026Updated 5 months ago
- ☆28Feb 27, 2024Updated 2 years ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆74Jun 6, 2024Updated 2 years ago
- R package for microbiome biomarker discovery☆201Feb 19, 2025Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 7 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 9 months ago
- diversity estimation under ecological networks☆83Jun 16, 2026Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CAMISIM: Simulating metagenomes and microbial communities☆230Jul 16, 2026Updated last month
- Woltka: a versatile meta'omic data classifier☆81Sep 8, 2025Updated 11 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆250Updated this week
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆421Aug 5, 2026Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆118Updated this week