biocore / gemelliLinks
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
☆85Updated 3 months ago
Alternatives and similar repositories for gemelli
Users that are interested in gemelli are comparing it to the libraries listed below
Sorting:
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Updated 5 years ago
- Network construction, analysis, and comparison for microbial compositional data☆174Updated last month
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆129Updated 5 months ago
- ☆20Updated 5 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Updated 3 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 3 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆122Updated 2 weeks ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 6 months ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- ☆39Updated 2 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 2 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- compositional data analysis toolbox☆60Updated 3 years ago
- Creating plasmid maps inside ggplot.☆89Updated 5 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 9 months ago
- ☆63Updated last month
- selbal: selection of balances for microbial signatures☆32Updated 11 months ago
- ☆43Updated 8 years ago
- R shiny app for interactive microbiome analysis☆56Updated 8 months ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆35Updated 6 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- ☆78Updated 2 years ago