SegataLab / lefseLinks
☆85Updated last year
Alternatives and similar repositories for lefse
Users that are interested in lefse are comparing it to the libraries listed below
Sorting:
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆125Updated 3 weeks ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- Course material for the metagenomics course☆46Updated 3 years ago
- Fast expectation maximization for microbial source tracking☆133Updated last year
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Metagenome analysis pipeline☆99Updated 4 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆150Updated last year
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆87Updated 4 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆133Updated last week
- ☆78Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆169Updated last week
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- A companion R package for the MicrobiomeAnalyst web server☆127Updated last week
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- ☆57Updated last year
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆179Updated 2 weeks ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆161Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Microbial ecological network visualization clustering☆132Updated 8 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆116Updated 2 years ago
- REference Sequence annotation and CuRatIon Pipeline☆97Updated last week
- ☆128Updated this week