SegataLab / lefseLinks
☆87Updated last year
Alternatives and similar repositories for lefse
Users that are interested in lefse are comparing it to the libraries listed below
Sorting:
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆130Updated 2 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆123Updated last year
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Course material for the metagenomics course☆47Updated 3 years ago
- Rapid and scalable correlation estimation for compositional data☆96Updated last year
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- A companion R package for the MicrobiomeAnalyst web server☆130Updated this week
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆90Updated 6 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆168Updated 4 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆177Updated last week
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Fast expectation maximization for microbial source tracking☆136Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆152Updated last month
- Metagenome analysis pipeline☆100Updated 4 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆142Updated last month
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆95Updated last year
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- REference Sequence annotation and CuRatIon Pipeline☆98Updated 2 weeks ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆180Updated 2 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- R implementation of the LEfSe method☆63Updated 2 months ago
- ☆78Updated 2 years ago
- SourceTracker2☆84Updated last year
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 4 months ago
- Microbial ecological network visualization clustering☆140Updated last month
- ☆58Updated last year