SegataLab / lefseLinks
☆85Updated last year
Alternatives and similar repositories for lefse
Users that are interested in lefse are comparing it to the libraries listed below
Sorting:
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 2 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆145Updated 9 months ago
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆129Updated last week
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆82Updated last month
- Rapid and scalable correlation estimation for compositional data☆93Updated last year
- Metagenome analysis pipeline☆99Updated 4 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆162Updated 2 years ago
- Fast expectation maximization for microbial source tracking☆130Updated last year
- ☆57Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆116Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆151Updated this week
- A companion R package for the MicrobiomeAnalyst web server☆127Updated 2 months ago
- Statistics and visualization for amplicon data☆71Updated 2 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 8 months ago
- ☆76Updated last year
- Helper Functions for Interactive Tree Of Life (iTOL)☆172Updated last week
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- ☆118Updated last month
- Microbial ecological network visualization clustering☆123Updated 5 months ago
- Microbiome Protocol eBook related documents and scripts.☆49Updated 4 years ago
- R implementation of the LEfSe method☆59Updated 4 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- REference Sequence annotation and CuRatIon Pipeline☆98Updated last week