adw96 / breakaway
Species richness with high diversity
☆68Updated last year
Alternatives and similar repositories for breakaway:
Users that are interested in breakaway are comparing it to the libraries listed below
- diversity estimation under ecological networks☆83Updated last year
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Pairwise multilevel comparison using adonis☆72Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆35Updated 9 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 weeks ago
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- R package for downstream analysis for anacapa eDNA pipeline☆23Updated 3 years ago
- Microbial community analysis tools in R☆20Updated 2 years ago
- Miscellaneous functions for metagenomic analysis.☆49Updated last month
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 6 months ago
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- Look Up Guild Information for Fungi in R☆21Updated last year
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 7 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- functions for analyzing phyloseq data☆26Updated last month
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- ☆10Updated 2 weeks ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆17Updated this week
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Linear Decomposition Model☆24Updated last year
- STAMPS 2018 course☆16Updated 6 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆120Updated this week
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆61Updated 9 months ago
- ggplots for nested data☆10Updated 8 months ago
- Analysis code for a manuscript on community similarity computation☆14Updated 5 years ago
- Informatic Sequence Classification Trees☆14Updated 3 years ago