Species richness with high diversity
☆69Jun 25, 2026Updated 3 months ago
Alternatives and similar repositories for breakaway
Users that are interested in breakaway are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- diversity estimation under ecological networks☆83Jun 16, 2026Updated 3 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 11 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 10 months ago
- ☆19Mar 8, 2026Updated 7 months ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Jun 21, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated 2 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- ☆66Apr 14, 2026Updated 5 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆144Sep 18, 2026Updated 3 weeks ago
- microbiome R package☆319Sep 8, 2026Updated last month
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fit LOg-RAtio Lasso regression for compositional covariates☆16Sep 29, 2026Updated 2 weeks ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 4 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated 2 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Jul 28, 2026Updated 2 months ago
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated 11 months ago
- Microbiome analysis☆58Updated this week
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- A user-friendly workflow for phylogenomics☆234Sep 28, 2026Updated 2 weeks ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 27, 2023Updated 2 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 3 years ago
- Transform files to the microtable object with microeco package☆29May 29, 2026Updated 4 months ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Aug 24, 2021Updated 5 years ago
- Miscellaneous functions for metagenomic analysis.☆53May 14, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆51Jun 6, 2026Updated 4 months ago
- STAMPS 2018 course☆14Aug 8, 2018Updated 8 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 5 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆16Dec 2, 2022Updated 3 years ago
- R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities☆20Jul 14, 2020Updated 6 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 8 months ago
- Network construction, analysis, and comparison for microbial compositional data☆180Jul 7, 2026Updated 3 months ago