adw96 / breakaway

Related projects ⓘ

Alternatives and complementary repositories for breakaway

• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆46Updated 5 months ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆46Updated 7 months ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆22Updated 2 years ago
• leffj / mctoolsr
  Microbial community analysis tools in R
  ☆20Updated 2 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 8 years ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated last year
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆69Updated last year
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆103Updated 2 months ago
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆31Updated 7 years ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆68Updated 6 months ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆108Updated last month
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆41Updated 2 years ago
• adrientaudiere / MiscMetabar
  R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
  ☆14Updated 2 weeks ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆18Updated last year
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated 3 months ago
• emmanuelparadis / ape
  analysis of phylogenetics and evolution
  ☆53Updated last week
• shaunpwilkinson / insect
  Informatic Sequence Classification Trees
  ☆14Updated 3 years ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆69Updated 2 years ago
• cmerkes / qPCR_LOD_Calc
  LoD calculator
  ☆18Updated 5 years ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆32Updated 2 years ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• viralemergence / virion
  An open database of vertebrate-virus interactions
  ☆37Updated 3 weeks ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆50Updated 2 years ago
• ggloor / CoDa_microbiome_tutorial
  Workshop for NGS'18 conference, Barcelona 2018
  ☆25Updated 5 years ago
• riffomonas / distances
  ☆12Updated 2 years ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆59Updated 5 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated last year