adw96 / breakaway

Related projects ⓘ

Alternatives and complementary repositories for breakaway

• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆46Updated 4 months ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆107Updated 2 weeks ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆46Updated 6 months ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 11 months ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆103Updated 2 months ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆41Updated last year
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 8 years ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆22Updated 2 years ago
• leffj / mctoolsr
  Microbial community analysis tools in R
  ☆20Updated 2 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated 2 months ago
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆31Updated 7 years ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆18Updated last year
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated 5 months ago
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆69Updated last year
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆69Updated 2 years ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆87Updated this week
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆50Updated 2 years ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆32Updated 2 years ago
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated last year
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆68Updated 5 months ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆66Updated 4 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 3 years ago
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated last year
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated 11 months ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆44Updated this week
• statdivlab / radEmu
  ☆50Updated 2 weeks ago