This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.
โ73Jun 6, 2024Updated last year
Alternatives and similar repositories for microshades
Users that are interested in microshades are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Speedy versions of phyloseq functionsโ48Apr 21, 2024Updated 2 years ago
- Dadaist2 ๐จ Highway to Rโ13Mar 7, 2025Updated last year
- Differential abundance (DA) and correlation analyses for microbial absolute abundance dataโ133Apr 21, 2026Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)โ71Mar 9, 2026Updated last month
- Metagenomic Estimation of Dietary Intake and Content.โ41Jan 29, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer โข AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Compare different differential abundance and expression methodsโ53Mar 8, 2022Updated 4 years ago
- โ19Mar 8, 2026Updated last month
- Vanilla regression methods for microbiome differential abundance analysisโ61Nov 3, 2020Updated 5 years ago
- Count and compare 16S rRNA genes within a genusโ16Aug 1, 2024Updated last year
- Tools for analyzing treesโ13Apr 16, 2025Updated last year
- Remove human reads from a sequencing runโ48Updated this week
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategiesโ18Feb 18, 2026Updated 2 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEโฆโ86Nov 3, 2025Updated 6 months ago
- ใ็็ฉใใใใฏใผใฏ่งฃๆใใฎ่ฃ่ถณ่ณๆโ26Feb 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways โข AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at โฆโ32May 22, 2020Updated 5 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.โ89Aug 13, 2024Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.โ54Jun 14, 2025Updated 10 months ago
- A comprehensive and customizable R package for microbiome analysis.โ24Aug 10, 2025Updated 8 months ago
- Functions for compositional analysis of high throughput sequencingโ29Dec 8, 2023Updated 2 years ago
- Count Regression for Correlated Observations with the Beta-binomialโ107Nov 13, 2025Updated 5 months ago
- โ32Jan 4, 2025Updated last year
- Site that contains musings and code for compositional analysis of high throughput sequencing experimentsโ17Apr 18, 2024Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductorโ31Mar 27, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer โข AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- โ52Mar 29, 2026Updated last month
- Phasing for metagenomics using PacBio long readsโ16Jul 14, 2021Updated 4 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome dataโฆโ11Jul 13, 2020Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meโฆโ26Feb 6, 2023Updated 3 years ago
- BEAV: Bacterial Element Annotation reVampedโ77Aug 21, 2025Updated 8 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagโฆโ101Apr 3, 2026Updated 3 weeks ago
- โ15Dec 11, 2022Updated 3 years ago
- Discover and annotate the viromeโ63Feb 11, 2026Updated 2 months ago
- tidyMicro GitHup Repositoryโ21Nov 17, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways โข AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbesโ26Dec 4, 2023Updated 2 years ago
- โ65Apr 14, 2026Updated 2 weeks ago
- ๐Read Office 365 data via the MS Graph API and Rโ15Jan 22, 2021Updated 5 years ago
- Quickly generate consensus assemblies for bacterial genomesโ14Sep 12, 2025Updated 7 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasetsโ142Apr 6, 2025Updated last year
- Identifying misassemblies via deep learningโ11May 1, 2024Updated 2 years ago
- โ13Mar 12, 2026Updated last month