microbiome / OMA
Orchestrating Microbiome Analysis
☆93Updated this week
Alternatives and similar repositories for OMA:
Users that are interested in OMA are comparing it to the libraries listed below
- Microbiome analysis☆52Updated this week
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆113Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 2 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆120Updated last week
- R implementation of the LEfSe method☆56Updated last month
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆115Updated 10 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆135Updated 4 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 3 months ago
- Visualize microbiome data with black magic ggtree☆67Updated 4 years ago
- ☆55Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆110Updated 2 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆39Updated last month
- Creating plasmid maps inside ggplot.☆83Updated 3 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆125Updated last month
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆114Updated 2 months ago
- An R package for microbial community analysis in an environmental context☆66Updated 4 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆90Updated 2 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆34Updated 3 years ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆24Updated 3 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆153Updated 2 years ago
- functions to analyse sanger sequencing reads in R☆101Updated 3 weeks ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- ☆85Updated 10 months ago
- Import qiime2 artifacts to R☆168Updated 3 months ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆52Updated last year
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆45Updated last month