microbiome / OMALinks
Orchestrating Microbiome Analysis
☆101Updated this week
Alternatives and similar repositories for OMA
Users that are interested in OMA are comparing it to the libraries listed below
Sorting:
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆116Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆145Updated 9 months ago
- R implementation of the LEfSe method☆59Updated 4 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- ☆57Updated last year
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆118Updated last month
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆125Updated 3 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Microbiome analysis☆53Updated last week
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- ☆85Updated last year
- Network construction, analysis, and comparison for microbial compositional data☆171Updated 5 months ago
- A companion R package for the MicrobiomeAnalyst web server☆127Updated 2 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 8 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 2 months ago
- Import qiime2 artifacts to R☆174Updated 8 months ago
- Curated Metagenomic Data of the Human Microbiome☆139Updated last month
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆162Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆154Updated this week
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆44Updated this week
- SourceTracker2☆80Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆56Updated last year
- A comprehensive R package for deep mining microbiome☆191Updated 2 months ago
- Transform files to the microtable object with microeco package☆27Updated 2 weeks ago
- Creating plasmid maps inside ggplot.☆89Updated 8 months ago
- R package for microbiome biomarker discovery☆188Updated 6 months ago
- ☆24Updated 5 years ago