microbiome / OMALinks
Orchestrating Microbiome Analysis
☆106Updated this week
Alternatives and similar repositories for OMA
Users that are interested in OMA are comparing it to the libraries listed below
Sorting:
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆129Updated 4 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆152Updated last month
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Updated 5 months ago
- R implementation of the LEfSe method☆63Updated 2 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆123Updated last year
- Microbiome analysis☆54Updated last week
- ☆58Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated this week
- Import qiime2 artifacts to R☆175Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆169Updated 4 months ago
- Network construction, analysis, and comparison for microbial compositional data☆172Updated last month
- SourceTracker2☆84Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- Curated Metagenomic Data of the Human Microbiome☆149Updated this week
- ☆87Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆131Updated last week
- A comprehensive R package for deep mining microbiome☆190Updated 2 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆178Updated 2 weeks ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆57Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆130Updated 3 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Transform files to the microtable object with microeco package☆28Updated 2 months ago
- Rapid and scalable correlation estimation for compositional data☆97Updated last year