Alternatives and similar repositories for MetONTIIME:

Users that are interested in MetONTIIME are comparing it to the libraries listed below

• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated 3 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆79Updated this week
• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆156Updated 10 months ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆111Updated last year
• rpetit3 / dragonflye
  Assemble bacterial isolate genomes from Nanopore reads
  ☆125Updated 2 months ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆133Updated last year
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆125Updated last week
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆201Updated 2 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆179Updated last month
• lskatz / mashtree
  Create a tree using Mash distances
  ☆161Updated last year
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆199Updated 7 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆114Updated 10 months ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆84Updated last year
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆143Updated this week
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆203Updated last month
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆193Updated 10 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆205Updated 2 years ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆233Updated last year
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆160Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆142Updated this week
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆95Updated 2 years ago
• wdecoster / chopper
  ☆183Updated 3 weeks ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆124Updated last month
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆107Updated last year
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆203Updated 7 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆147Updated 11 months ago
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆143Updated 4 months ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆141Updated 6 months ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆177Updated 2 weeks ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆116Updated 4 years ago