Alternatives and similar repositories for MetONTIIME

Users that are interested in MetONTIIME are comparing it to the libraries listed below

• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated last week
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆142Updated 3 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆94Updated 2 weeks ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆203Updated last year
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆171Updated last week
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆141Updated last year
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆123Updated 2 years ago
• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆188Updated last week
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆110Updated 5 months ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆83Updated 2 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆161Updated this week
• cmks / DAS_Tool
  DAS Tool
  ☆157Updated last year
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆100Updated 3 years ago
• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆139Updated 4 years ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆87Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆220Updated last week
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆119Updated this week
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆117Updated 2 years ago
• wwood / singlem
  Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
  ☆162Updated last week
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆115Updated last year
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆112Updated last year
• lskatz / mashtree
  Create a tree using Mash distances
  ☆171Updated last year
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆138Updated 2 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆123Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆186Updated 4 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆163Updated 3 months ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆138Updated 3 years ago
• wdecoster / chopper
  ☆211Updated last week
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆194Updated last week
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆117Updated 4 years ago