A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
☆129Jan 8, 2026Updated 7 months ago
Alternatives and similar repositories for MetONTIIME
Users that are interested in MetONTIIME are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Feb 3, 2020Updated 6 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- ☆116Updated this week
- Comparison of multiple long read datasets☆180Aug 3, 2026Updated 3 weeks ago
- ☆51Jan 23, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated 2 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆53May 18, 2026Updated 3 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆117Nov 20, 2023Updated 2 years ago
- Import qiime2 artifacts to R☆186Dec 12, 2024Updated last year
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆52Sep 24, 2025Updated 11 months ago
- Metagenomic classification of long-read sequencing data☆109Jan 22, 2026Updated 7 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆143Apr 27, 2026Updated 4 months ago
- De novo construction of isoforms from long-read data☆39Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- REference Sequence annotation and CuRatIon Pipeline☆101Jul 21, 2026Updated last month
- ☆20Apr 24, 2025Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆235Jul 29, 2026Updated last month
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆99Jul 12, 2024Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- Speedy versions of phyloseq functions☆49Apr 21, 2024Updated 2 years ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 9 months ago
- quality filtering tool for long reads☆412Sep 17, 2025Updated 11 months ago
- An overview of all nanopack tools☆290Jun 2, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- De novo clustering of long transcript reads into genes☆80Apr 27, 2025Updated last year
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- ☆98Apr 5, 2026Updated 4 months ago
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆53Updated this week
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆102Jul 10, 2025Updated last year
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆259Aug 20, 2026Updated last week
- MAGinator - Accurate SNV calling and profiling of MAGs☆28Mar 23, 2026Updated 5 months ago
- ☆259Aug 3, 2026Updated 3 weeks ago
- (Meta-)genome screening for functional and natural product gene sequences☆118Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for the identification of (coding) gene structures in draft genomes.☆42Jul 28, 2026Updated last month
- Similarity networks of biosynthetic gene clusters☆179Apr 1, 2026Updated 5 months ago
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Research release basecalling models and configurations☆120May 20, 2026Updated 3 months ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆68Apr 21, 2025Updated last year
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Jul 14, 2026Updated last month
- A post sequencing QC tool for Oxford Nanopore sequencers☆119Updated this week