Alternatives and similar repositories for MetONTIIME

Users that are interested in MetONTIIME are comparing it to the libraries listed below

• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆149Updated 2 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆97Updated 3 weeks ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆205Updated last year
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆146Updated last week
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆88Updated 5 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆230Updated 3 months ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆126Updated 3 years ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆147Updated this week
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆173Updated this week
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆184Updated 3 weeks ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆118Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆122Updated 2 weeks ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆118Updated 4 years ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆88Updated 2 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆148Updated 5 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆163Updated last year
• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆143Updated 4 years ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆120Updated 2 years ago
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆101Updated 3 years ago
• wdecoster / chopper
  ☆222Updated 2 weeks ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆223Updated this week
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆115Updated 7 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆124Updated 2 years ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆196Updated 3 months ago
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆113Updated 2 years ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆111Updated last year
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆208Updated last year
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆180Updated 7 months ago
• lskatz / mashtree
  Create a tree using Mash distances
  ☆177Updated 2 years ago